RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SDF2L1Q9HCN8 221 aa8.66□□□□□ -1.02
CD44-203ENST00000278386 MBD2Q9UBB5 411 aa8.66□□□□□ -1.02
CD44-203ENST00000278386 TRAV8-1A0A0A6YYK1 113 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 IGHV3-16A0A0C4DH30 117 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 LOC100131303A0A0U1RQF7 123 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 K7EP13 123 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 M0R2P5 195 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 GNRH2O43555 120 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 TYMSP04818 313 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 CRYGDP07320 174 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 DEFA1P59665 94 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 DEFA3P59666 94 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 RAB2AP61019 212 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 GNG5P63218 68 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 PQLC2Q6ZP29 291 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 C10orf126Q8N4M7 172 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 TREM1Q9NP99 234 aa8.65□□□□□ -1.02
CD44-203ENST00000278386 HMGB3O15347 200 aaKnown RBP8.64□□□□□ -1.03
CD44-203ENST00000278386 PSCAO43653 123 aa8.64□□□□□ -1.03
CD44-203ENST00000278386 TDRG1Q3Y452 100 aa8.64□□□□□ -1.03
CD44-203ENST00000278386 NDFIP1Q9BT67 221 aa8.64□□□□□ -1.03
CD44-203ENST00000278386 VPS13BQ7Z7G8 4022 aa8.63□□□□□ -1.03
CD44-203ENST00000278386 FBLL1A6NHQ2 334 aaKnown RBP8.63□□□□□ -1.03
CD44-203ENST00000278386 Q5VSD8 79 aa8.63□□□□□ -1.03
CD44-203ENST00000278386 SH2D6Q7Z4S9 175 aa8.63□□□□□ -1.03
CD44-203ENST00000278386 ASB13Q8WXK3 278 aa8.63□□□□□ -1.03
CD44-203ENST00000278386 FRZBQ92765 325 aa8.63□□□□□ -1.03
CD44-203ENST00000278386 KCNS1Q96KK3 526 aa8.63□□□□□ -1.03
CD44-203ENST00000278386 ARL14EPLP0DKL9 152 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 GATA1P15976 413 aaPredicted RBP8.62□□□□□ -1.03
CD44-203ENST00000278386 CDC34P49427 236 aaPredicted RBP8.62□□□□□ -1.03
CD44-203ENST00000278386 XGP55808 180 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 KRTAP10-1P60331 282 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 OR10G9Q8NGN4 311 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 OR10G7Q8NGN6 311 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 SGK494Q96LW2 274 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 WFDC1Q9HC57 220 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 ALG5Q9Y673 324 aa8.62□□□□□ -1.03
CD44-203ENST00000278386 IGHV3-38A0A0C4DH36 116 aa8.61□□□□□ -1.03
CD44-203ENST00000278386 INAFM2P0DMQ5 153 aa8.61□□□□□ -1.03
CD44-203ENST00000278386 GCSHP23434 173 aa8.61□□□□□ -1.03
CD44-203ENST00000278386 OR10J3Q5JRS4 329 aa8.61□□□□□ -1.03
CD44-203ENST00000278386 ARL6IP6Q8N6S5 226 aa8.61□□□□□ -1.03
CD44-203ENST00000278386 TVP23CQ96ET8 276 aa8.61□□□□□ -1.03
CD44-203ENST00000278386 Q9HAA7 133 aa8.61□□□□□ -1.03
CD44-203ENST00000278386 IGHV3-73A0A0B4J1V6 119 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 TRAV8-6A0A0B4J262 113 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 SERTM2A0A1B0GWG4 89 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 K7EQM0 130 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 RHOHQ15669 191 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 ZNF876PQ49A33 203 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 ZFP69Q49AA0 526 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 C5orf17Q8NAS9 161 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 HSD17B11Q8NBQ5 300 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 PRADC1Q9BSG0 188 aa8.6□□□□□ -1.03
CD44-203ENST00000278386 FAT1Q14517 4588 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 IGLV5-52A0A0A0MRZ9 124 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 PTTG1O95997 202 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 GCGP01275 180 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 PFN1P07737 140 aaKnown RBP8.59□□□□□ -1.03
CD44-203ENST00000278386 TIRAPP58753 221 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 HAMPP81172 84 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 LINC01556Q5JQF7 62 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 SLC25A29Q8N8R3 303 aa8.59□□□□□ -1.03
CD44-203ENST00000278386 HERC1Q15751 4861 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 RS1O15537 224 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 IGHV3-30P01768 117 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 IGHV3-33P01772 117 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 SMR3BP02814 79 aaPredicted RBP8.58□□□□□ -1.04
CD44-203ENST00000278386 TCRAP04437 139 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 STAG3L2P0CL84 134 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 STAG3L3P0CL85 134 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 IGHV3-30-3P0DP02 117 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 IGHV3-30-5P0DP03 117 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 ZNF80P51504 273 aaPredicted RBP8.58□□□□□ -1.04
CD44-203ENST00000278386 CFAP126Q5VTH2 177 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 TMEM75Q8N9X5 138 aa8.58□□□□□ -1.04
CD44-203ENST00000278386 TAAR5O14804 337 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 GCHFRP30047 84 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 SMUG1Q53HV7 270 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 ZNF506Q5JVG8 444 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 DPPA3Q6W0C5 159 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 PRNTQ86SH4 94 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 OR2G3Q8NGZ4 309 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 NTN5Q8WTR8 489 aaPredicted RBP8.57□□□□□ -1.04
CD44-203ENST00000278386 C11orf21Q9P2W6 132 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 PSG8Q9UQ74 426 aa8.57□□□□□ -1.04
CD44-203ENST00000278386 TRBV6-4A0A1B0GX49 114 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 IBA57-AS1B1ANH7 110 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 CIDEAO60543 219 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 FLI1Q01543 452 aaPredicted RBP8.56□□□□□ -1.04
CD44-203ENST00000278386 LELP1Q5T871 98 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 CYB561D1Q8N8Q1 229 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 RAB24Q969Q5 203 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 C9orf85Q96MD7 179 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 BOLA1Q9Y3E2 137 aa8.56□□□□□ -1.04
CD44-203ENST00000278386 LRCOL1A6NCL2 159 aa8.55□□□□□ -1.04
CD44-203ENST00000278386 PGPEP1LA6NFU8 196 aa8.55□□□□□ -1.04
CD44-203ENST00000278386 GGTLC3B5MD39 225 aa8.55□□□□□ -1.04
CD44-203ENST00000278386 MBP02144 154 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 125.9 ms