RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 C10orf142B7Z368 130 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 CFAP161Q6P656 301 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 FAM159AQ6UWV7 190 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 C2orf82Q6UX34 121 aa12.7□□□□□ -0.38
GPC1-201ENST00000264039 NBR2O15453 112 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 COX6CP09669 75 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 RNASE4P34096 147 aaKnown RBP12.69□□□□□ -0.38
GPC1-201ENST00000264039 SHISA2Q6UWI4 295 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 CCDC179H3BU77 68 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 K7EM74 188 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 ASCL5Q7RTU5 278 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 VCX2Q9H322 139 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 SONP18583 2426 aaKnown RBP12.69□□□□□ -0.38
GPC1-201ENST00000264039 IGLV1-44P01699 117 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 SUMO2P61956 95 aaKnown RBP12.69□□□□□ -0.38
GPC1-201ENST00000264039 TEX36Q5VZQ5 186 aa12.69□□□□□ -0.38
GPC1-201ENST00000264039 PTPN13Q12923 2485 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 CR1LQ2VPA4 569 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 TIMD4Q96H15 378 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 A0A087WWL8 130 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 TMEM178BH3BS89 294 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 SRD5A1P18405 259 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 PRO1854Q9UHT4 67 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 KALRNO60229 2985 aa12.68□□□□□ -0.38
GPC1-201ENST00000264039 TRBV7-9A0A0J9YWB2 115 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 K7EIM0 57 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 KLRB1Q12918 225 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 SMIM2Q9BVW6 85 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 COL5A1P20908 1838 aaPredicted RBP12.67□□□□□ -0.38
GPC1-201ENST00000264039 LOXP28300 417 aaPredicted RBP12.67□□□□□ -0.38
GPC1-201ENST00000264039 DEFB1P60022 68 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 SETD2Q9BYW2 2564 aaPredicted RBP12.67□□□□□ -0.38
GPC1-201ENST00000264039 I3L2K1 104 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 UBTD1Q9HAC8 227 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 CTSZQ9UBR2 303 aa12.67□□□□□ -0.38
GPC1-201ENST00000264039 BUB1B-PAK6H3BSN5 160 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 FSTL3O95633 263 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 TP53TG1Q9Y2A0 90 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 ATRXP46100 2492 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 TRAV4A0A0B4J268 109 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 CRYGCP07315 174 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 MYO9AB2RTY4 2548 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 TACC2O95359 2948 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 RS1O15537 224 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 CFAP126Q5VTH2 177 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 METTL26Q96S19 204 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 DPM3Q9P2X0 92 aa12.66□□□□□ -0.38
GPC1-201ENST00000264039 IGLV3-9A0A075B6K5 115 aa12.65□□□□□ -0.38
GPC1-201ENST00000264039 TRAV8-3A0A0A6YYJ7 113 aa12.65□□□□□ -0.38
GPC1-201ENST00000264039 C15orf32Q32M92 178 aa12.65□□□□□ -0.38
GPC1-201ENST00000264039 PHLDA1Q8WV24 401 aaPredicted RBP12.65□□□□□ -0.38
GPC1-201ENST00000264039 ASIPP42127 132 aa12.65□□□□□ -0.38
GPC1-201ENST00000264039 CDIP1Q9H305 208 aa12.65□□□□□ -0.38
GPC1-201ENST00000264039 OR10J6PQ8NGY7 276 aa12.65□□□□□ -0.38
GPC1-201ENST00000264039 DUSP14O95147 198 aaKnown RBP12.64□□□□□ -0.39
GPC1-201ENST00000264039 PDE6HQ13956 83 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 MRPL23Q16540 153 aaKnown RBP12.64□□□□□ -0.39
GPC1-201ENST00000264039 Q6ZQT7 251 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 C22orf34Q6ZV56 151 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 RNF185Q96GF1 192 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 MGAQ8IWI9 3026 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 AGPAT4-IT1Q9H0P7 198 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 A4D1N5 150 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 CEP295Q9C0D2 2601 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 DMXL2Q8TDJ6 3036 aa12.64□□□□□ -0.39
GPC1-201ENST00000264039 MORN3Q6PF18 240 aaPredicted RBP12.63□□□□□ -0.39
GPC1-201ENST00000264039 SPXQ9BT56 116 aa12.63□□□□□ -0.39
GPC1-201ENST00000264039 TEX49A0A1B0GTD5 131 aa12.63□□□□□ -0.39
GPC1-201ENST00000264039 TEX22C9J3V5 150 aa12.63□□□□□ -0.39
GPC1-201ENST00000264039 NDUFV3P56181 108 aaKnown RBP12.63□□□□□ -0.39
GPC1-201ENST00000264039 RPL39P62891 51 aaKnown RBP12.62□□□□□ -0.39
GPC1-201ENST00000264039 DEFB124Q8NES8 71 aa12.62□□□□□ -0.39
GPC1-201ENST00000264039 RNASE6Q93091 150 aaKnown RBP12.62□□□□□ -0.39
GPC1-201ENST00000264039 MAP1AP78559 2803 aaPredicted RBP12.62□□□□□ -0.39
GPC1-201ENST00000264039 LINC01559Q495D7 138 aa12.62□□□□□ -0.39
GPC1-201ENST00000264039 COL4A2P08572 1712 aa12.61□□□□□ -0.39
GPC1-201ENST00000264039 ASPMQ8IZT6 3477 aa12.61□□□□□ -0.39
GPC1-201ENST00000264039 IGHV3OR16-10A0A075B7F0 116 aa12.61□□□□□ -0.39
GPC1-201ENST00000264039 SHISA9B4DS77 424 aa12.61□□□□□ -0.39
GPC1-201ENST00000264039 GATA4P43694 442 aa12.61□□□□□ -0.39
GPC1-201ENST00000264039 DUX3Q96PT4 197 aa12.61□□□□□ -0.39
GPC1-201ENST00000264039 COLQQ9Y215 455 aaPredicted RBP12.61□□□□□ -0.39
GPC1-201ENST00000264039 A0A1W2PNU3 283 aaPredicted RBP12.61□□□□□ -0.39
GPC1-201ENST00000264039 NDUFA11Q86Y39 141 aa12.61□□□□□ -0.39
GPC1-201ENST00000264039 C11orf86A6NJI1 115 aa12.6□□□□□ -0.39
GPC1-201ENST00000264039 IGHV3-11P01762 117 aa12.6□□□□□ -0.39
GPC1-201ENST00000264039 RPL32P62910 135 aaKnown RBP12.6□□□□□ -0.39
GPC1-201ENST00000264039 H3BMM0 161 aa12.6□□□□□ -0.39
GPC1-201ENST00000264039 UBE2WQ96B02 151 aa12.6□□□□□ -0.39
GPC1-201ENST00000264039 U3KQK5 164 aa12.6□□□□□ -0.39
GPC1-201ENST00000264039 LOC400499M0QZD8 3231 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 SMCPP49901 116 aaPredicted RBP12.59□□□□□ -0.39
GPC1-201ENST00000264039 ATXN8Q156A1 80 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 CHCHD5Q9BSY4 110 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 TRBV7-3A0A075B6L6 115 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 CEACAM4O75871 244 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 C5orf64Q2M2E5 130 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 DPH3P1Q9H4G8 78 aa12.59□□□□□ -0.39
GPC1-201ENST00000264039 CRIP2P52943 208 aaPredicted RBP12.59□□□□□ -0.39
GPC1-201ENST00000264039 FOXC1Q12948 553 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms