RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SAMD5Q5TGI4 173 aa9.78□□□□□ -0.84
LIG1-201ENST00000263274 SIVA1O15304 175 aa9.77□□□□□ -0.84
LIG1-201ENST00000263274 IGHV3-11P01762 117 aa9.77□□□□□ -0.84
LIG1-201ENST00000263274 MGPP08493 103 aa9.77□□□□□ -0.84
LIG1-201ENST00000263274 EFNA4P52798 201 aa9.77□□□□□ -0.84
LIG1-201ENST00000263274 Q8N9W7 124 aa9.77□□□□□ -0.84
LIG1-201ENST00000263274 TLN2Q9Y4G6 2542 aa9.77□□□□□ -0.85
LIG1-201ENST00000263274 TMEM8BA6NDV4 472 aa9.77□□□□□ -0.85
LIG1-201ENST00000263274 IGKCP01834 107 aa9.77□□□□□ -0.85
LIG1-201ENST00000263274 SMIM17P0DL12 118 aa9.77□□□□□ -0.85
LIG1-201ENST00000263274 LY6EQ16553 131 aa9.77□□□□□ -0.85
LIG1-201ENST00000263274 IGHG4P01861 327 aa9.77□□□□□ -0.85
LIG1-201ENST00000263274 FGF6P10767 208 aa9.77□□□□□ -0.85
LIG1-201ENST00000263274 BUB3O43684 328 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 SMIM13P0DJ93 91 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 OR9G4Q8NGQ1 327 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 NXT2Q9NPJ8 142 aaKnown RBP9.76□□□□□ -0.85
LIG1-201ENST00000263274 ODF3BA8MYP8 253 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 IGLC6P0CF74 106 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 OR4X2Q8NGF9 303 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 RNF185Q96GF1 192 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 C11orf21Q9P2W6 132 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 BSNQ9UPA5 3926 aa9.76□□□□□ -0.85
LIG1-201ENST00000263274 USP9YO00507 2555 aaPredicted RBP9.76□□□□□ -0.85
LIG1-201ENST00000263274 IGKV3D-20A0A0C4DH25 116 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 SRD5A1P18405 259 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 ADORA2A-AS1P86434 159 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 CD300EQ496F6 205 aaPredicted RBP9.75□□□□□ -0.85
LIG1-201ENST00000263274 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 BRD3OSQ6XYD6 125 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 PGPEP1Q9NXJ5 209 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 FXYD2P54710 66 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 ETDBQ3ZM63 59 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 LCNL1Q6ZST4 164 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 BPESC1Q9GZL8 116 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 MRPL35Q9NZE8 188 aaKnown RBP9.75□□□□□ -0.85
LIG1-201ENST00000263274 FLNCQ14315 2725 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 IGF1P05019 195 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 SH2D6Q7Z4S9 175 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 EEF1AKMT3Q96AZ1 226 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 GEMIN7Q9H840 131 aaKnown RBP9.75□□□□□ -0.85
LIG1-201ENST00000263274 U3KQK5 164 aa9.75□□□□□ -0.85
LIG1-201ENST00000263274 PTPN13Q12923 2485 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 A4D1N5 150 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 DPM2O94777 84 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 C8orf86Q6ZUL3 223 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 ZNF502Q8TBZ5 544 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 HRNRQ86YZ3 2850 aaPredicted RBP9.74□□□□□ -0.85
LIG1-201ENST00000263274 AGRNO00468 2067 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.74□□□□□ -0.85
LIG1-201ENST00000263274 ATP5G2Q06055 141 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 CHAC1Q9BUX1 264 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 SFTA2Q6UW10 78 aa9.74□□□□□ -0.85
LIG1-201ENST00000263274 WFDC2Q14508 124 aa9.73□□□□□ -0.85
LIG1-201ENST00000263274 FAM110DQ8TAY7 271 aaPredicted RBP9.73□□□□□ -0.85
LIG1-201ENST00000263274 HIST1H4GQ99525 98 aa9.73□□□□□ -0.85
LIG1-201ENST00000263274 SLC50A1Q9BRV3 221 aa9.73□□□□□ -0.85
LIG1-201ENST00000263274 SMPXQ9UHP9 88 aa9.73□□□□□ -0.85
LIG1-201ENST00000263274 MINOS1Q5TGZ0 78 aa9.73□□□□□ -0.85
LIG1-201ENST00000263274 GATD1Q8NB37 220 aa9.73□□□□□ -0.85
LIG1-201ENST00000263274 MINOS1-NBL1R4GNA1 71 aa9.73□□□□□ -0.85
LIG1-201ENST00000263274 PRB1P04280 392 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 C14orf178Q8N769 122 aaPredicted RBP9.72□□□□□ -0.85
LIG1-201ENST00000263274 CCDC140Q96MF4 163 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 FLNBO75369 2602 aaKnown RBP9.72□□□□□ -0.85
LIG1-201ENST00000263274 F6UB75 175 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 LAGE3Q14657 143 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 PHLDA3Q9Y5J5 127 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 CELSR1Q9NYQ6 3014 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 A0A1W2PPR1 153 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 SCGB1A1P11684 91 aa9.72□□□□□ -0.85
LIG1-201ENST00000263274 TRBV25-1A0A075B6N4 114 aa9.71□□□□□ -0.85
LIG1-201ENST00000263274 RNASE4P34096 147 aaKnown RBP9.71□□□□□ -0.86
LIG1-201ENST00000263274 AMTNQ6UX39 209 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 Q8N8P6 123 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 SCGB3A1Q96QR1 104 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 ZFAND3Q9H8U3 227 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 ATP5LO75964 103 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 ARL3P36405 182 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 EMP1P54849 157 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 PAX8Q06710 450 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 KLRB1Q12918 225 aa9.71□□□□□ -0.86
LIG1-201ENST00000263274 F5H697 171 aa9.7□□□□□ -0.86
LIG1-201ENST00000263274 H3BMG7 143 aa9.7□□□□□ -0.86
LIG1-201ENST00000263274 OOSP1A8MZH6 123 aa9.7□□□□□ -0.86
LIG1-201ENST00000263274 IGKV3-20P01619 116 aa9.7□□□□□ -0.86
LIG1-201ENST00000263274 LINC01559Q495D7 138 aa9.7□□□□□ -0.86
LIG1-201ENST00000263274 Q8N6K4 173 aa9.7□□□□□ -0.86
LIG1-201ENST00000263274 TRBV7-9A0A0J9YWB2 115 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 TRBV12-3P01733 135 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 GATA3P23771 443 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 SRSF1Q07955 248 aaKnown RBP eCLIP9.69□□□□□ -0.863e-6■■■■□ 20.3
LIG1-201ENST00000263274 OR10J6PQ8NGY7 276 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 HELZ2Q9BYK8 2649 aaKnown RBP9.69□□□□□ -0.86
LIG1-201ENST00000263274 NPFFO15130 113 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 UBE2E1P51965 193 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 DPF1Q92782 380 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 SIRPDQ9H106 197 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 SMIM20Q8N5G0 67 aa9.69□□□□□ -0.86
LIG1-201ENST00000263274 MAPKAPK5-AS1Q8N8E1 139 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms