RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 MRPL51Q4U2R6 128 aaKnown RBP13.03□□□□□ -0.32
VRK1-201ENST00000216639 LINC01006Q8NI28 216 aa13.03□□□□□ -0.32
VRK1-201ENST00000216639 PRELID3AQ96N28 172 aa13.03□□□□□ -0.32
VRK1-201ENST00000216639 IGHV4-4A0A075B6R2 117 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 PPBPP02775 128 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 CD33P20138 364 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 RAB4AP20338 218 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 S100A4P26447 101 aaKnown RBP13.02□□□□□ -0.32
VRK1-201ENST00000216639 CKS2P33552 79 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 KRTDAPP60985 99 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 SPANXN1Q5VSR9 72 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 FOXI2Q6ZQN5 318 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 Q6ZQT7 251 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 MSRB1Q9NZV6 116 aa13.02□□□□□ -0.32
VRK1-201ENST00000216639 TSSC4Q9Y5U2 329 aaPredicted RBP13.02□□□□□ -0.32
VRK1-201ENST00000216639 ZNF469Q96JG9 3925 aaPredicted RBP13.02□□□□□ -0.32
VRK1-201ENST00000216639 MXRA5Q9NR99 2828 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 H3BVH4 76 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 CSN3P07498 182 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 MED14OSP0DP75 135 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 CD28P10747 220 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 TSPOP30536 169 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 ANXA2RQ3ZCQ2 193 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 PRSS3P2Q8NHM4 247 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 URB1-AS1Q96HZ7 61 aa13.02□□□□□ -0.33
VRK1-201ENST00000216639 TSTD3H0UI37 97 aa13.01□□□□□ -0.33
VRK1-201ENST00000216639 LY6G6DO95868 133 aa13.01□□□□□ -0.33
VRK1-201ENST00000216639 PKIAP61925 76 aa13.01□□□□□ -0.33
VRK1-201ENST00000216639 OR10AG1Q8NH19 301 aa13.01□□□□□ -0.33
VRK1-201ENST00000216639 SMR3AQ99954 134 aa13.01□□□□□ -0.33
VRK1-201ENST00000216639 CCDC168Q8NDH2 2452 aa13.01□□□□□ -0.33
VRK1-201ENST00000216639 FLNAP21333 2647 aaKnown RBP13□□□□□ -0.33
VRK1-201ENST00000216639 NDUFA7O95182 113 aa13□□□□□ -0.33
VRK1-201ENST00000216639 FAM159AQ6UWV7 190 aa13□□□□□ -0.33
VRK1-201ENST00000216639 FA2HQ7L5A8 372 aa13□□□□□ -0.33
VRK1-201ENST00000216639 RAX2Q96IS3 184 aa13□□□□□ -0.33
VRK1-201ENST00000216639 A0A1W2PRX2 142 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 C7orf71A4D174 169 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 CCL24O00175 119 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 C11orf44Q8N8P7 122 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 AP5S1Q9NUS5 200 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 LAMTOR2Q9Y2Q5 125 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 FHL3Q13643 280 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 KIR3DS1Q14943 382 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 RNF185Q96GF1 192 aa12.99□□□□□ -0.33
VRK1-201ENST00000216639 CITED2Q99967 270 aaPredicted RBP12.99□□□□□ -0.33
VRK1-201ENST00000216639 TIMM8BQ9Y5J9 83 aaPredicted RBP12.99□□□□□ -0.33
VRK1-201ENST00000216639 IGHV1-24A0A0C4DH33 117 aa12.98□□□□□ -0.33
VRK1-201ENST00000216639 CDKN1BP46527 198 aa12.98□□□□□ -0.33
VRK1-201ENST00000216639 TMEM61Q8N0U2 210 aa12.98□□□□□ -0.33
VRK1-201ENST00000216639 PHLDA3Q9Y5J5 127 aa12.98□□□□□ -0.33
VRK1-201ENST00000216639 C3orf79P0CE67 100 aa12.97□□□□□ -0.33
VRK1-201ENST00000216639 DEFB114Q30KQ6 69 aa12.97□□□□□ -0.33
VRK1-201ENST00000216639 TRAV12-3A0A0B4J271 114 aa12.96□□□□□ -0.33
VRK1-201ENST00000216639 IGKV3-20P01619 116 aa12.96□□□□□ -0.33
VRK1-201ENST00000216639 RNF114Q9Y508 228 aa12.96□□□□□ -0.33
VRK1-201ENST00000216639 UNC79Q9P2D8 2635 aa12.96□□□□□ -0.33
VRK1-201ENST00000216639 TRAV25A0A0B4J276 109 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 OR4C46A6NHA9 309 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 TCF21O43680 179 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 LEPROTL1O95214 131 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 EVI2AP22794 236 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 DEFB131AP59861 70 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 HIST2H2BDQ6DRA6 164 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 SPAG8Q99932 426 aaPredicted RBP12.96□□□□□ -0.34
VRK1-201ENST00000216639 MAP1LC3AQ9H492 121 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 SCRT2Q9NQ03 307 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 SIGLEC8Q9NYZ4 499 aa12.96□□□□□ -0.34
VRK1-201ENST00000216639 LOC389332A0A1B0GUA5 103 aa12.95□□□□□ -0.34
VRK1-201ENST00000216639 SMKR1H3BMG3 65 aa12.95□□□□□ -0.34
VRK1-201ENST00000216639 GNRH2O43555 120 aa12.95□□□□□ -0.34
VRK1-201ENST00000216639 BTF3P20290 206 aaKnown RBP12.95□□□□□ -0.34
VRK1-201ENST00000216639 IFI27P40305 119 aaPredicted RBP12.95□□□□□ -0.34
VRK1-201ENST00000216639 PMCHL1Q16048 86 aa12.95□□□□□ -0.34
VRK1-201ENST00000216639 TEX43Q6ZNM6 134 aa12.95□□□□□ -0.34
VRK1-201ENST00000216639 ZNF664Q8N3J9 261 aa12.95□□□□□ -0.34
VRK1-201ENST00000216639 M0R381 172 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 NCR2O95944 276 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 NPYP01303 97 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 TDRG1Q3Y452 100 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 PRO1933Q9H354 126 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 HSPB8Q9UJY1 196 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 TLN2Q9Y4G6 2542 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 BAHCC1Q9P281 2608 aa12.94□□□□□ -0.34
VRK1-201ENST00000216639 HLA-DRB4P13762 266 aa12.93□□□□□ -0.34
VRK1-201ENST00000216639 SPINK13Q1W4C9 94 aa12.93□□□□□ -0.34
VRK1-201ENST00000216639 CD300EQ496F6 205 aaPredicted RBP12.93□□□□□ -0.34
VRK1-201ENST00000216639 HLA-DRB4X5D2U9 266 aa12.93□□□□□ -0.34
VRK1-201ENST00000216639 LINC00587B1AMM8 73 aa12.93□□□□□ -0.34
VRK1-201ENST00000216639 CD7P09564 240 aa12.93□□□□□ -0.34
VRK1-201ENST00000216639 RNASE3P12724 160 aaKnown RBP12.93□□□□□ -0.34
VRK1-201ENST00000216639 TMEM70Q9BUB7 260 aa12.93□□□□□ -0.34
VRK1-201ENST00000216639 SONP18583 2426 aaKnown RBP12.93□□□□□ -0.34
VRK1-201ENST00000216639 TRAV12-2A0A075B6T6 113 aa12.92□□□□□ -0.34
VRK1-201ENST00000216639 TNFRSF6BO95407 300 aa12.92□□□□□ -0.34
VRK1-201ENST00000216639 AMTNQ6UX39 209 aa12.92□□□□□ -0.34
VRK1-201ENST00000216639 Q8N976 141 aa12.92□□□□□ -0.34
VRK1-201ENST00000216639 MRAP2Q96G30 205 aa12.92□□□□□ -0.34
VRK1-201ENST00000216639 VAMP8Q9BV40 100 aa12.92□□□□□ -0.34
VRK1-201ENST00000216639 DPH3P1Q9H4G8 78 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms