RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 MBD2Q9UBB5 411 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 RPH3ALQ9UNE2 315 aa7.14□□□□□ -1.27
SCN1A-222ENST00000642141 HMGB3O15347 200 aaKnown RBP7.13□□□□□ -1.27
SCN1A-222ENST00000642141 CRISP2P16562 243 aa7.13□□□□□ -1.27
SCN1A-222ENST00000642141 CSN1S1P47710 185 aa7.13□□□□□ -1.27
SCN1A-222ENST00000642141 ZNF680Q8NEM1 530 aa7.13□□□□□ -1.27
SCN1A-222ENST00000642141 VSIG2Q96IQ7 327 aa7.13□□□□□ -1.27
SCN1A-222ENST00000642141 ZNF492Q9P255 531 aa7.13□□□□□ -1.27
SCN1A-222ENST00000642141 IGHV1OR15-1A0A075B7D0 117 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 A0A096LPF7 62 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 PET100P0DJ07 73 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 MED14OSP0DP75 135 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 ANXA2RQ3ZCQ2 193 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 AKAP14Q86UN6 197 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 KRTAP1-5Q9BYS1 174 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 MDFICQ9P1T7 246 aa7.12□□□□□ -1.27
SCN1A-222ENST00000642141 DYNC1H1Q14204 4646 aaKnown RBP7.11□□□□□ -1.27
SCN1A-222ENST00000642141 PGPA6NDG6 321 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 SPINK4O60575 86 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 NMBP08949 121 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 S100A1P23297 94 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 TCL1AP56279 114 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 RAB2AP61019 212 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 KHDC3LQ587J8 217 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 C8orf49Q96NF6 230 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 ARPC5LQ9BPX5 153 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 LINC00467Q9BRT7 94 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 NAGKQ9UJ70 344 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 ALG5Q9Y673 324 aa7.11□□□□□ -1.27
SCN1A-222ENST00000642141 A0A1W2PPV4 95 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 C16orf90A8MZG2 172 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 DIRC3C9JPN6 131 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 PAX4O43316 350 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 SFTA3P0C7M3 94 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 TAS2R45P59539 299 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 TMEM183BQ1AE95 376 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 TMEM183AQ8IXX5 376 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 SGK494Q96LW2 274 aa7.1□□□□□ -1.27
SCN1A-222ENST00000642141 DNAH11Q96DT5 4516 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 TRAV8-1A0A0A6YYK1 113 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 GNRH2O43555 120 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 GNG5P63218 68 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 ZNF415Q09FC8 603 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 ZNF266Q14584 549 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 ACOT6Q3I5F7 207 aaPredicted RBP7.09□□□□□ -1.27
SCN1A-222ENST00000642141 IBA57Q5T440 356 aaKnown RBP7.09□□□□□ -1.27
SCN1A-222ENST00000642141 GOLT1AQ6ZVE7 132 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 LYPD1Q8N2G4 141 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 OR10G4Q8NGN3 311 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 OR10G9Q8NGN4 311 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 OR10G7Q8NGN6 311 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 CMTM2Q8TAZ6 248 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 ST6GAL2Q96JF0 529 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 OTORQ9NRC9 128 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 HHLA3Q9XRX5 114 aa7.09□□□□□ -1.27
SCN1A-222ENST00000642141 MRPS16Q9Y3D3 137 aaKnown RBP7.09□□□□□ -1.27
SCN1A-222ENST00000642141 RBAKDNA6NC62 111 aa7.08□□□□□ -1.28
SCN1A-222ENST00000642141 F6UZH7 168 aa7.08□□□□□ -1.28
SCN1A-222ENST00000642141 H3BNG1 76 aa7.08□□□□□ -1.28
SCN1A-222ENST00000642141 FHL2Q14192 279 aa7.08□□□□□ -1.28
SCN1A-222ENST00000642141 Q5BKY6 102 aa7.08□□□□□ -1.28
SCN1A-222ENST00000642141 HSD17B11Q8NBQ5 300 aa7.08□□□□□ -1.28
SCN1A-222ENST00000642141 TVP23CQ96ET8 276 aa7.08□□□□□ -1.28
SCN1A-222ENST00000642141 TRGV4A0A0C4DH28 118 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 ATP6V1G1O75348 118 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 NXPH4O95158 308 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 ARL14EPLP0DKL9 152 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 FUSP35637 526 aaKnown RBP eCLIP7.07□□□□□ -1.28
SCN1A-222ENST00000642141 CRYBA4P53673 196 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 TTC32Q5I0X7 151 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 FAM159AQ6UWV7 190 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 SPATA12Q7Z6I5 190 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 ZNF479Q96JC4 524 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 C18orf15Q96N68 181 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 UPK3BQ9BT76 320 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 KRTAP4-5Q9BYR2 181 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 MED28Q9H204 178 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 PRO0255Q9UI72 69 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 TNFRSF18Q9Y5U5 241 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 ICOSQ9Y6W8 199 aa7.07□□□□□ -1.28
SCN1A-222ENST00000642141 FAM74A1Q5RGS3 127 aa7.06□□□□□ -1.28
SCN1A-222ENST00000642141 Q6AWC8 147 aa7.06□□□□□ -1.28
SCN1A-222ENST00000642141 SH3BGRL3Q9H299 93 aa7.06□□□□□ -1.28
SCN1A-222ENST00000642141 TREM1Q9NP99 234 aa7.06□□□□□ -1.28
SCN1A-222ENST00000642141 IGHV3-16A0A0C4DH30 117 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 TRBV7-9A0A0J9YWB2 115 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 SIVA1O15304 175 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 GYPEP15421 78 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 ATP6V0CP27449 155 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 CDC34P49427 236 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-222ENST00000642141 LINC00315P59091 139 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 KRTAP10-2P60368 255 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 LYPD5Q6UWN5 251 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 PQLC2Q6ZP29 291 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 IQCF2Q8IXL9 164 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 RAB24Q969Q5 203 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 RYR1P21817 5038 aa7.05□□□□□ -1.28
SCN1A-222ENST00000642141 TRGV11A0A075B6L2 103 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 LOC100131303A0A0U1RQF7 123 aa7.04□□□□□ -1.28
SCN1A-222ENST00000642141 C9JCJ5 164 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms