RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 C5orf51A6NDU8 294 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 ORM1P02763 201 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 RPL29P47914 159 aaKnown RBP10.09□□□□□ -0.79
SYNE2-228ENST00000639659 TMEM183BQ1AE95 376 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 GCSAMLQ5JQS6 135 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 SPANXN2Q5MJ10 180 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 TMEM183AQ8IXX5 376 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 TMEM14CQ9P0S9 112 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 ZNF492Q9P255 531 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 NAGKQ9UJ70 344 aa10.09□□□□□ -0.79
SYNE2-228ENST00000639659 C9JCJ5 164 aa10.08□□□□□ -0.8
SYNE2-228ENST00000639659 K7EP13 123 aa10.08□□□□□ -0.8
SYNE2-228ENST00000639659 ZNF138P52744 262 aa10.08□□□□□ -0.8
SYNE2-228ENST00000639659 PDE6HQ13956 83 aa10.08□□□□□ -0.8
SYNE2-228ENST00000639659 BAK1Q16611 211 aa10.08□□□□□ -0.8
SYNE2-228ENST00000639659 NTN5Q8WTR8 489 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-228ENST00000639659 MITD1Q8WV92 249 aa10.08□□□□□ -0.8
SYNE2-228ENST00000639659 FAM30AQ9NZY2 134 aa10.08□□□□□ -0.8
SYNE2-228ENST00000639659 CENPXA8MT69 81 aa10.07□□□□□ -0.8
SYNE2-228ENST00000639659 NMBP08949 121 aa10.07□□□□□ -0.8
SYNE2-228ENST00000639659 PVALBP20472 110 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-228ENST00000639659 Q8N814 137 aa10.07□□□□□ -0.8
SYNE2-228ENST00000639659 OR10G4Q8NGN3 311 aa10.07□□□□□ -0.8
SYNE2-228ENST00000639659 SLC25A2Q9BXI2 301 aa10.07□□□□□ -0.8
SYNE2-228ENST00000639659 IGHV3-16A0A0C4DH30 117 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 IGHV3-38A0A0C4DH36 116 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 IGSF23A1L1A6 192 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 LRCOL1A6NCL2 159 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 IGHV3-30P01768 117 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 IGHV3-33P01772 117 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 PLA2G1BP04054 148 aaKnown RBP10.06□□□□□ -0.8
SYNE2-228ENST00000639659 OR10J4P0C629 311 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 IGHV3-30-3P0DP02 117 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 IGHV3-30-5P0DP03 117 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 MIR17HGQ75NE6 70 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 STX12Q86Y82 276 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 OR4C5Q8NGB2 326 aa10.06□□□□□ -0.8
SYNE2-228ENST00000639659 TRGV11A0A075B6L2 103 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 S100A11P31949 105 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 BTCP35070 178 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 SULT1A1P50225 295 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 HBG1P69891 147 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 HBG2P69892 147 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 OR10J3Q5JRS4 329 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 FAM159AQ6UWV7 190 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 LINC00528Q8N1L1 170 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 PHYHIPLQ96FC7 376 aa10.05□□□□□ -0.8
SYNE2-228ENST00000639659 TRAV4A0A0B4J268 109 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 NBEAP1P0C6P0 100 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 CSN1S1P47710 185 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 VWC2Q2TAL6 325 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 IQCF2Q8IXL9 164 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 THAP6Q8TBB0 222 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 SPXQ9BT56 116 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 OR51M1Q9H341 326 aa10.04□□□□□ -0.8
SYNE2-228ENST00000639659 TRAV8-6A0A0B4J262 113 aa10.03□□□□□ -0.8
SYNE2-228ENST00000639659 ZNF266Q14584 549 aa10.03□□□□□ -0.8
SYNE2-228ENST00000639659 TMEM252Q8N6L7 170 aa10.03□□□□□ -0.8
SYNE2-228ENST00000639659 SEC22CQ9BRL7 303 aa10.03□□□□□ -0.8
SYNE2-228ENST00000639659 PAXXQ9BUH6 204 aa10.03□□□□□ -0.8
SYNE2-228ENST00000639659 NPCDR1Q9BY65 106 aa10.03□□□□□ -0.8
SYNE2-228ENST00000639659 LYRM2Q9NU23 88 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-228ENST00000639659 RPH3ALQ9UNE2 315 aa10.03□□□□□ -0.8
SYNE2-228ENST00000639659 TRAV6A0A075B6T7 132 aa10.02□□□□□ -0.81
SYNE2-228ENST00000639659 LECT2O14960 151 aa10.02□□□□□ -0.81
SYNE2-228ENST00000639659 OR7C2O60412 319 aa10.02□□□□□ -0.81
SYNE2-228ENST00000639659 RANP62826 216 aaKnown RBP10.02□□□□□ -0.81
SYNE2-228ENST00000639659 RASL10AQ92737 203 aa10.02□□□□□ -0.81
SYNE2-228ENST00000639659 FAM167A-AS1Q96KT0 104 aa10.02□□□□□ -0.81
SYNE2-228ENST00000639659 C11orf1Q9H5F2 150 aa10.02□□□□□ -0.81
SYNE2-228ENST00000639659 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.01□□□□□ -0.81
SYNE2-228ENST00000639659 IBA57-AS1B1ANH7 110 aa10.01□□□□□ -0.81
SYNE2-228ENST00000639659 RAB32Q13637 225 aa10.01□□□□□ -0.81
SYNE2-228ENST00000639659 LINC01556Q5JQF7 62 aa10.01□□□□□ -0.81
SYNE2-228ENST00000639659 SH2D6Q7Z4S9 175 aa10.01□□□□□ -0.81
SYNE2-228ENST00000639659 FXYD5Q96DB9 178 aa10.01□□□□□ -0.81
SYNE2-228ENST00000639659 C2orf50Q96LR7 162 aa10.01□□□□□ -0.81
SYNE2-228ENST00000639659 HYLS1Q96M11 299 aa10.01□□□□□ -0.81
SYNE2-228ENST00000639659 KRTAP29-1A8MX34 341 aaPredicted RBP10□□□□□ -0.81
SYNE2-228ENST00000639659 M0R2P5 195 aa10□□□□□ -0.81
SYNE2-228ENST00000639659 GNRH2O43555 120 aa10□□□□□ -0.81
SYNE2-228ENST00000639659 ATP6V1FQ16864 119 aa10□□□□□ -0.81
SYNE2-228ENST00000639659 SYT8Q8NBV8 401 aa10□□□□□ -0.81
SYNE2-228ENST00000639659 IGHV3-73A0A0B4J1V6 119 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 TRBV7-9A0A0J9YWB2 115 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 F6UZH7 168 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 IL7P13232 177 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 UBE2L3P68036 154 aaKnown RBP9.99□□□□□ -0.81
SYNE2-228ENST00000639659 WFDC2Q14508 124 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 Q6AWC8 147 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 DEFB104AQ8WTQ1 72 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 CHAC2Q8WUX2 184 aa9.99□□□□□ -0.81
SYNE2-228ENST00000639659 SDHCQ99643 169 aaPredicted RBP9.99□□□□□ -0.81
SYNE2-228ENST00000639659 FBLL1A6NHQ2 334 aaKnown RBP9.98□□□□□ -0.81
SYNE2-228ENST00000639659 GATA1P15976 413 aaPredicted RBP9.98□□□□□ -0.81
SYNE2-228ENST00000639659 LINC01620Q4KN68 170 aa9.98□□□□□ -0.81
SYNE2-228ENST00000639659 RBAKDNA6NC62 111 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 TYMSP04818 313 aa9.97□□□□□ -0.81
SYNE2-228ENST00000639659 PFN1P07737 140 aaKnown RBP9.97□□□□□ -0.81
SYNE2-228ENST00000639659 TIRAPP58753 221 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms