RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DEFB131AP59861 70 aa13.71□□□□□ -0.21
CLN3-254ENST00000637050 EBLN2Q6P2I7 272 aa13.71□□□□□ -0.21
CLN3-254ENST00000637050 OR4B1Q8NGF8 309 aa13.71□□□□□ -0.21
CLN3-254ENST00000637050 RPP21Q9H633 154 aaKnown RBP13.71□□□□□ -0.21
CLN3-254ENST00000637050 MAP6D1Q9H9H5 199 aa13.71□□□□□ -0.21
CLN3-254ENST00000637050 TENM1Q9UKZ4 2725 aa13.71□□□□□ -0.21
CLN3-254ENST00000637050 SH2D1AO60880 128 aa13.7□□□□□ -0.22
CLN3-254ENST00000637050 CD33P20138 364 aa13.7□□□□□ -0.22
CLN3-254ENST00000637050 RAB4BP61018 213 aa13.7□□□□□ -0.22
CLN3-254ENST00000637050 CT83Q5H943 113 aa13.7□□□□□ -0.22
CLN3-254ENST00000637050 KCNIP4Q6PIL6 250 aa13.7□□□□□ -0.22
CLN3-254ENST00000637050 ZFAND2AQ8N6M9 145 aa13.7□□□□□ -0.22
CLN3-254ENST00000637050 TMEM158Q8WZ71 300 aa13.7□□□□□ -0.22
CLN3-254ENST00000637050 DUSP14O95147 198 aaKnown RBP13.69□□□□□ -0.22
CLN3-254ENST00000637050 CRISP2P16562 243 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 FAM3BP58499 235 aaPredicted RBP13.69□□□□□ -0.22
CLN3-254ENST00000637050 SPATA3Q8NHX4 192 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 ODF3Q96PU9 254 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 PYGO2Q9BRQ0 406 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 TRBV24-1A0A075B6N3 115 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 TGIF2-C20orf24A0A0A6YYL0 155 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 SMIM27A0A1W2PRY6 76 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 CA1P00915 261 aaPredicted RBP13.69□□□□□ -0.22
CLN3-254ENST00000637050 CXCL1P09341 107 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 INSL3P51460 131 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 C3orf56Q8N813 242 aa13.69□□□□□ -0.22
CLN3-254ENST00000637050 FBN1P35555 2871 aaKnown RBP13.68□□□□□ -0.22
CLN3-254ENST00000637050 FABP5P3A8MUU1 101 aa13.68□□□□□ -0.22
CLN3-254ENST00000637050 ODF3L2Q3SX64 289 aa13.68□□□□□ -0.22
CLN3-254ENST00000637050 SHISA2Q6UWI4 295 aa13.68□□□□□ -0.22
CLN3-254ENST00000637050 APRG1Q8IVJ8 170 aa13.68□□□□□ -0.22
CLN3-254ENST00000637050 TSKUQ8WUA8 353 aa13.68□□□□□ -0.22
CLN3-254ENST00000637050 ATRQ13535 2644 aa13.68□□□□□ -0.22
CLN3-254ENST00000637050 A8MTW9 85 aa13.67□□□□□ -0.22
CLN3-254ENST00000637050 BEAN1Q3B7T3 259 aa13.67□□□□□ -0.22
CLN3-254ENST00000637050 PRR9Q5T870 116 aa13.67□□□□□ -0.22
CLN3-254ENST00000637050 C12orf54Q6X4T0 127 aa13.67□□□□□ -0.22
CLN3-254ENST00000637050 OR2D3Q8NGH3 330 aa13.67□□□□□ -0.22
CLN3-254ENST00000637050 NIT2Q9NQR4 276 aa13.67□□□□□ -0.22
CLN3-254ENST00000637050 TRAV9-1A0A075B6T8 112 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 A0A1W2PPQ1 181 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 KNCNA6PVL3 124 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 A8MWL6 223 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 HLA-DRB4P13762 266 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 C9orf66Q5T8R8 295 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 WFDC9Q8NEX5 89 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 HLA-DRB4X5D2U9 266 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 KLLNB2CW77 178 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 H3BMM0 161 aa13.66□□□□□ -0.22
CLN3-254ENST00000637050 CMC4P56277 68 aaPredicted RBP13.66□□□□□ -0.22
CLN3-254ENST00000637050 RAB5AP20339 215 aa13.65□□□□□ -0.22
CLN3-254ENST00000637050 TCL1AP56279 114 aa13.65□□□□□ -0.22
CLN3-254ENST00000637050 RPL19P84098 196 aaKnown RBP13.65□□□□□ -0.22
CLN3-254ENST00000637050 ACTL10Q5JWF8 245 aa13.65□□□□□ -0.22
CLN3-254ENST00000637050 AMTNQ6UX39 209 aa13.65□□□□□ -0.22
CLN3-254ENST00000637050 FAM210BQ96KR6 192 aa13.65□□□□□ -0.22
CLN3-254ENST00000637050 FAM110AQ9BQ89 295 aa13.65□□□□□ -0.22
CLN3-254ENST00000637050 GFRA4Q9GZZ7 299 aa13.65□□□□□ -0.22
CLN3-254ENST00000637050 FAM231BA6NCW3 169 aa13.64□□□□□ -0.23
CLN3-254ENST00000637050 OR11H12B2RN74 326 aa13.64□□□□□ -0.23
CLN3-254ENST00000637050 UBE2CO00762 179 aa13.64□□□□□ -0.23
CLN3-254ENST00000637050 GPX1P07203 203 aa13.64□□□□□ -0.23
CLN3-254ENST00000637050 LEPP41159 167 aa13.64□□□□□ -0.23
CLN3-254ENST00000637050 BTF3L4Q96K17 158 aa13.64□□□□□ -0.23
CLN3-254ENST00000637050 NEU1Q99519 415 aa13.64□□□□□ -0.23
CLN3-254ENST00000637050 MCRIP2Q9BUT9 160 aaKnown RBP13.64□□□□□ -0.23
CLN3-254ENST00000637050 TMEM189A5PLL7 270 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 IGKV3-20P01619 116 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 DEFA6Q01524 100 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 KIR3DS1Q14943 382 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 LINC01559Q495D7 138 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 Q6AWC8 147 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 GTSF1Q8WW33 167 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 NAT8BQ9UHF3 227 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 J3KRW8 73 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 TYMSP04818 313 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 C11orf21Q9P2W6 132 aa13.63□□□□□ -0.23
CLN3-254ENST00000637050 TRAV21A0A0B4J279 112 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 HIGD1CA8MV81 97 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 C1orf196B1AJZ1 125 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 GZMBP10144 247 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 TSPOP30536 169 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 RNASE4P34096 147 aaKnown RBP13.62□□□□□ -0.23
CLN3-254ENST00000637050 FOXA3P55318 350 aaPredicted RBP13.62□□□□□ -0.23
CLN3-254ENST00000637050 LBHQ53QV2 105 aaPredicted RBP13.62□□□□□ -0.23
CLN3-254ENST00000637050 Q6ZQT7 251 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 ZNF575Q86XF7 245 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 NUP35Q8NFH5 326 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 CLUHP3Q96NS8 147 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 C19orf73Q9NVV2 129 aa13.62□□□□□ -0.23
CLN3-254ENST00000637050 XKRY2A2RUG3 117 aa13.61□□□□□ -0.23
CLN3-254ENST00000637050 ORM1P02763 201 aa13.61□□□□□ -0.23
CLN3-254ENST00000637050 CD7P09564 240 aa13.61□□□□□ -0.23
CLN3-254ENST00000637050 CDKN1BP46527 198 aa13.61□□□□□ -0.23
CLN3-254ENST00000637050 RPS20P60866 119 aaKnown RBP13.61□□□□□ -0.23
CLN3-254ENST00000637050 SORL1Q92673 2214 aa13.61□□□□□ -0.23
CLN3-254ENST00000637050 IGKV3D-20A0A0C4DH25 116 aa13.6□□□□□ -0.23
CLN3-254ENST00000637050 RBMY1BA6NDE4 496 aaKnown RBP13.6□□□□□ -0.23
CLN3-254ENST00000637050 RBMY1EA6NEQ0 496 aaKnown RBP13.6□□□□□ -0.23
CLN3-254ENST00000637050 RBMY1DP0C7P1 496 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms