RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 C17orf77Q96MU5 243 aa8.46□□□□□ -1.06
UPF3A-212ENST00000619079 PGPEP1Q9NXJ5 209 aa8.46□□□□□ -1.06
UPF3A-212ENST00000619079 SLC25A15Q9Y619 301 aa8.46□□□□□ -1.06
UPF3A-212ENST00000619079 MYO18BQ8IUG5 2567 aa8.46□□□□□ -1.06
UPF3A-212ENST00000619079 MYMXA0A1B0GTQ4 84 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 K7EMI3 77 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 CD40P25942 277 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 MORN3Q6PF18 240 aaPredicted RBP8.45□□□□□ -1.06
UPF3A-212ENST00000619079 TEN1Q86WV5 123 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 ASCL2Q99929 193 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 M0R3E3 92 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 IGKV1-17P01599 117 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 ZFAND6Q6FIF0 208 aa8.45□□□□□ -1.06
UPF3A-212ENST00000619079 FAM90A27PA6NNH2 459 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 I3L2K1 104 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 MRPS12O15235 138 aaKnown RBP8.44□□□□□ -1.06
UPF3A-212ENST00000619079 ENSAO43768 121 aaKnown RBP8.44□□□□□ -1.06
UPF3A-212ENST00000619079 EGR2P11161 476 aaPredicted RBP8.44□□□□□ -1.06
UPF3A-212ENST00000619079 CCL3L1P16619 93 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 ADORA2A-AS1P86434 159 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 NFE4Q86UQ8 179 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 RNF125Q96EQ8 232 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 PRR25Q96S07 402 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 PROCRQ9UNN8 238 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 PRR14LQ5THK1 2151 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 HIVEP3Q5T1R4 2406 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 IGHV1-46P01743 117 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 PPIFP30405 207 aaKnown RBP8.44□□□□□ -1.06
UPF3A-212ENST00000619079 SMCPP49901 116 aaPredicted RBP8.44□□□□□ -1.06
UPF3A-212ENST00000619079 C3orf36Q3SXR2 165 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 SRSF8Q9BRL6 282 aaKnown RBP8.44□□□□□ -1.06
UPF3A-212ENST00000619079 PCNX1Q96RV3 2341 aa8.44□□□□□ -1.06
UPF3A-212ENST00000619079 HEATR1Q9H583 2144 aaKnown RBP8.44□□□□□ -1.06
UPF3A-212ENST00000619079 TRBV20-1A0A075B6N2 111 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 TRAV12-1A0A0B4J245 112 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 M0R1B8 84 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 DIAPH2-AS1Q14236 149 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 LAGE3Q14657 143 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 TMEM200BQ69YZ2 307 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 TEX29Q8N6K0 151 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 SIGLEC9Q9Y336 463 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 TEX22C9J3V5 150 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 H7C1H1 209 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 CRYGBP07316 175 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 ADGRG4Q8IZF6 3080 aa8.43□□□□□ -1.06
UPF3A-212ENST00000619079 RAI1Q7Z5J4 1906 aaPredicted RBP8.42□□□□□ -1.06
UPF3A-212ENST00000619079 IGLV2-18A0A075B6J9 118 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 F8VRH5 84 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 ZNF688P0C7X2 276 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 APELAP0DMC3 54 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 ZNF491Q8N8L2 437 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 OR11H6Q8NGC7 330 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 SS18L2Q9UHA2 77 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 PSMB2P49721 201 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 UBE2D3P61077 147 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 UBE2D2P62837 147 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 FHL3Q13643 280 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 PPP1R27Q86WC6 154 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 RAB1BQ9H0U4 201 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 SPANXA1Q9NS26 97 aa8.42□□□□□ -1.06
UPF3A-212ENST00000619079 NDUFA3O95167 84 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 GLMPQ8WWB7 406 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 ITLN2Q8WWU7 325 aaPredicted RBP8.41□□□□□ -1.06
UPF3A-212ENST00000619079 LOC107984156A0A0G2JMH3 177 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 FABP5P3A8MUU1 101 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 A8MWV9 139 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 ORM1P02763 201 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 UBE2D1P51668 147 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 ARL17AQ8IVW1 177 aa8.41□□□□□ -1.06
UPF3A-212ENST00000619079 IGKV2-40A0A087WW87 121 aaPredicted RBP8.4□□□□□ -1.06
UPF3A-212ENST00000619079 PRSS29PA6NIE9 313 aa8.4□□□□□ -1.06
UPF3A-212ENST00000619079 IGKV2D-40P01614 121 aaPredicted RBP8.4□□□□□ -1.06
UPF3A-212ENST00000619079 CDSNQ15517 529 aa8.4□□□□□ -1.06
UPF3A-212ENST00000619079 DTX2Q86UW9 622 aa8.4□□□□□ -1.06
UPF3A-212ENST00000619079 SBSPONQ8IVN8 264 aa8.4□□□□□ -1.06
UPF3A-212ENST00000619079 MSRB1Q9NZV6 116 aa8.4□□□□□ -1.06
UPF3A-212ENST00000619079 AGRNO00468 2067 aa8.4□□□□□ -1.06
UPF3A-212ENST00000619079 UBR5O95071 2799 aaPredicted RBP8.4□□□□□ -1.07
UPF3A-212ENST00000619079 LINC01549A6NIU2 74 aa8.4□□□□□ -1.07
UPF3A-212ENST00000619079 LGALS1P09382 135 aaKnown RBP8.4□□□□□ -1.07
UPF3A-212ENST00000619079 RPL7P18124 248 aaKnown RBP8.4□□□□□ -1.07
UPF3A-212ENST00000619079 SRD5A1P18405 259 aa8.4□□□□□ -1.07
UPF3A-212ENST00000619079 GATA3P23771 443 aa8.4□□□□□ -1.07
UPF3A-212ENST00000619079 ZNF474Q6S9Z5 364 aaPredicted RBP8.4□□□□□ -1.07
UPF3A-212ENST00000619079 FLNCQ14315 2725 aa8.4□□□□□ -1.07
UPF3A-212ENST00000619079 INTS1Q8N201 2190 aaKnown RBP8.4□□□□□ -1.07
UPF3A-212ENST00000619079 K7EIM0 57 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 NDUFB3O43676 98 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 GAS8-AS1O95177 125 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 ASIPP42127 132 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 TMEM78Q5T7P6 136 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 IL17RELQ6ZVW7 336 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 CARD19Q96LW7 228 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 FASNP49327 2511 aaKnown RBP8.39□□□□□ -1.07
UPF3A-212ENST00000619079 IGHV3-72A0A0B4J1Y9 119 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 SLC25A16P16260 332 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 ZNF80P51504 273 aaPredicted RBP8.39□□□□□ -1.07
UPF3A-212ENST00000619079 CITED1Q99966 193 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 UFC1Q9Y3C8 167 aa8.39□□□□□ -1.07
UPF3A-212ENST00000619079 SPTBN1Q01082 2364 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms