RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RBAKDNA6NC62 111 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 AMBPP02760 352 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 CCDC28AQ8IWP9 274 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 TMEM75Q8N9X5 138 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 RXFP4Q8TDU9 374 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 C11orf21Q9P2W6 132 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 A0A1W2PRE2 83 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 UMAD1C9J7I0 102 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 H2AFB1P0C5Y9 115 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 TSPOP30536 169 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 SULT1A2P50226 295 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 TAS2R60P59551 318 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 CST9LP1Q5W188 147 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 NOP10Q9NPE3 64 aaKnown RBP9.58□□□□□ -0.88
LINC00540-202ENST00000616974 H7BYZ3 331 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 PRNTQ86SH4 94 aa9.58□□□□□ -0.88
LINC00540-202ENST00000616974 PCNPQ8WW12 178 aaKnown RBP9.58□□□□□ -0.88
LINC00540-202ENST00000616974 SMIM9A6NGZ8 99 aa9.57□□□□□ -0.88
LINC00540-202ENST00000616974 IFNA7P01567 189 aa9.57□□□□□ -0.88
LINC00540-202ENST00000616974 DEFB130BP0DP73 79 aa9.57□□□□□ -0.88
LINC00540-202ENST00000616974 DEFB130AP0DP74 79 aa9.57□□□□□ -0.88
LINC00540-202ENST00000616974 C11orf72Q8NBR9 251 aa9.57□□□□□ -0.88
LINC00540-202ENST00000616974 GSN-AS1Q9NRJ2 163 aa9.57□□□□□ -0.88
LINC00540-202ENST00000616974 PSG8Q9UQ74 426 aa9.57□□□□□ -0.88
LINC00540-202ENST00000616974 SCO2A0A1W2PP80 73 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 PEX7O00628 323 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 CEMP1Q6PRD7 247 aaPredicted RBP9.56□□□□□ -0.88
LINC00540-202ENST00000616974 CYB561D1Q8N8Q1 229 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 NIPSNAP3BQ9BS92 247 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 ATG101Q9BSB4 218 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 TREM1Q9NP99 234 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 KLF12Q9Y4X4 402 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 HTN3P15516 51 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 TMEM256Q8N2U0 113 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 NHLRC2Q8NBF2 726 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 MDFICQ9P1T7 246 aa9.56□□□□□ -0.88
LINC00540-202ENST00000616974 EIF5AP63241 154 aaKnown RBP9.55□□□□□ -0.88
LINC00540-202ENST00000616974 FLI1Q01543 452 aaPredicted RBP9.55□□□□□ -0.88
LINC00540-202ENST00000616974 TMEM263Q8WUH6 116 aaKnown RBP9.55□□□□□ -0.88
LINC00540-202ENST00000616974 DERL1Q9BUN8 251 aa9.55□□□□□ -0.88
LINC00540-202ENST00000616974 GNG13Q9P2W3 67 aa9.55□□□□□ -0.88
LINC00540-202ENST00000616974 NAGKQ9UJ70 344 aa9.55□□□□□ -0.88
LINC00540-202ENST00000616974 GNRH2O43555 120 aa9.55□□□□□ -0.88
LINC00540-202ENST00000616974 Q6AWC8 147 aa9.55□□□□□ -0.88
LINC00540-202ENST00000616974 Q6ZTI0 123 aa9.55□□□□□ -0.88
LINC00540-202ENST00000616974 ARL2-SNX15V9GYD0 113 aa9.55□□□□□ -0.88
LINC00540-202ENST00000616974 EPPK1P58107 5090 aaKnown RBP9.54□□□□□ -0.88
LINC00540-202ENST00000616974 CBY3A6NI87 242 aa9.54□□□□□ -0.88
LINC00540-202ENST00000616974 IGLL5B9A064 214 aa9.54□□□□□ -0.88
LINC00540-202ENST00000616974 SPART-AS1P0CW21 52 aa9.54□□□□□ -0.88
LINC00540-202ENST00000616974 Q86TA4 180 aa9.54□□□□□ -0.88
LINC00540-202ENST00000616974 DNAH10Q8IVF4 4471 aa9.54□□□□□ -0.88
LINC00540-202ENST00000616974 IGHV1OR15-1A0A075B7D0 117 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 DEFB131BA0A096LNP1 70 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 TEX46H3BTG2 121 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 GCGP01275 180 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 CRIP1P50238 77 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 DPPA3Q6W0C5 159 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 C16orf74Q96GX8 76 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 PYGO2Q9BRQ0 406 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 RGS13O14921 159 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 TMEM183BQ1AE95 376 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 ANXA2RQ3ZCQ2 193 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 TMEM183AQ8IXX5 376 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 C2CD4CQ8TF44 421 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 ZC2HC1AQ96GY0 325 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 C20orf144Q9BQM9 153 aa9.53□□□□□ -0.88
LINC00540-202ENST00000616974 DNAH6Q9C0G6 4158 aa9.52□□□□□ -0.88
LINC00540-202ENST00000616974 GAGE12BA1L429 117 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 C11orf94C9JXX5 98 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 GAGE7O76087 117 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 NMBP08949 121 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 GAGE12FP0CL80 117 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 GAGE12GP0CL81 117 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 GAGE12IP0CL82 117 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 DAD1P61803 113 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 ZNF575Q86XF7 245 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 EIF4E3Q8N5X7 224 aaKnown RBP9.52□□□□□ -0.89
LINC00540-202ENST00000616974 MRPL16Q9NX20 251 aaKnown RBP9.52□□□□□ -0.89
LINC00540-202ENST00000616974 TMEM189A5PLL7 270 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 NUPR2A6NF83 97 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 ARL6IP6Q8N6S5 226 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 TIMM8BQ9Y5J9 83 aaPredicted RBP9.52□□□□□ -0.89
LINC00540-202ENST00000616974 LENEPQ9Y5L5 61 aa9.52□□□□□ -0.89
LINC00540-202ENST00000616974 TRAV1-1A0A0B4J248 108 aa9.51□□□□□ -0.89
LINC00540-202ENST00000616974 TRBV7-9A0A0J9YWB2 115 aa9.51□□□□□ -0.89
LINC00540-202ENST00000616974 IGHV4-4A0A075B6R2 117 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 TYMSP04818 313 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 HOXA5P20719 270 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 TRAV10A0A0B4J240 114 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 PGPEP1LA6NFU8 196 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 RAB5CP51148 216 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 EIF5AL1Q6IS14 154 aaKnown RBP9.5□□□□□ -0.89
LINC00540-202ENST00000616974 ZNF680Q8NEM1 530 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 HIST1H2BAQ96A08 127 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 APLNQ9ULZ1 77 aa9.5□□□□□ -0.89
LINC00540-202ENST00000616974 IGKV3D-20A0A0C4DH25 116 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 LYRM9A8MSI8 78 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 ZNF493Q6ZR52 646 aa9.49□□□□□ -0.89
LINC00540-202ENST00000616974 LINC00612Q8N6U2 182 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms