RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 GNRH2O43555 120 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 TRBV12-3P01733 135 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 MPV17L2Q567V2 206 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 C5orf56Q8N8D9 126 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 PRORYQ9H606 182 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 SIGLEC8Q9NYZ4 499 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 RAI1Q7Z5J4 1906 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 TRANK1O15050 2925 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 DOCK11Q5JSL3 2073 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 CYSLTR1Q9Y271 337 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 LINC01619G3V211 115 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 NDUFA4O00483 81 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 CTSGP08311 255 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 GATA1P15976 413 aaPredicted RBP6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 PLP1P60201 277 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 ORMDL2Q53FV1 153 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 LYRM7Q5U5X0 104 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 GTSF1Q8WW33 167 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 MS4A6AQ9H2W1 248 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 BOD1L1Q8NFC6 3051 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 CNOT1A5YKK6 2376 aaKnown RBP6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 BCL6BQ8N143 479 aaPredicted RBP6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 SIRPDQ9H106 197 aa6.96□□□□□ -1.29
PDLIM5-222ENST00000615540 PPP1R17O96001 155 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 CT83Q5H943 113 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 LINC00173Q6ZV60 143 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 C11orf68Q9H3H3 251 aaKnown RBP6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 TRGV1A0A0A0MS02 117 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 WI2-2373I1.2A0A1W2PRP0 233 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 ZNF815PA8K554 130 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 SPOCK3Q9BQ16 436 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 IGHV7-4-1A0A0J9YVY3 117 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 C2orf88Q9BSF0 95 aa6.96□□□□□ -1.3
PDLIM5-222ENST00000615540 TDRG1Q3Y452 100 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 LINC00469Q8N7U9 141 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 DTX2Q86UW9 622 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 VCX2Q9H322 139 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 SPCS1Q9Y6A9 102 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 SAMD13Q5VXD3 122 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 TMEM101Q96IK0 257 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 SNHG12Q9BXW3 62 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 TRAV2A0A0B4J234 112 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 ZNF876PQ49A33 203 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 C10orf105Q8TEF2 133 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 CACNA1GO43497 2377 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 MRAP2Q96G30 205 aa6.95□□□□□ -1.3
PDLIM5-222ENST00000615540 CHD3Q12873 2000 aaKnown RBP6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 CSMD1Q96PZ7 3565 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 A0A0U1RRA0 63 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 ORAOV1Q8WV07 137 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 TOMM7Q9P0U1 55 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 XCL2Q9UBD3 114 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 SLURP1P55000 103 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 AGPAT4-IT1Q9H0P7 198 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 MSRB1Q9NZV6 116 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 LINC00574Q9H8X3 128 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 TCTEX1D4Q5JR98 221 aa6.94□□□□□ -1.3
PDLIM5-222ENST00000615540 ODF3BA8MYP8 253 aa6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 RNASE1P07998 156 aaKnown RBP6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 GATA3P23771 443 aa6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 IGHV3-38A0A0C4DH36 116 aa6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 IGLL1P15814 213 aa6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 LINC00322Q6ZN03 302 aaPredicted RBP6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 TNRC6BQ9UPQ9 1833 aaKnown RBP6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 CIDEAO60543 219 aa6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 PCNX2A6NKB5 2137 aa6.93□□□□□ -1.3
PDLIM5-222ENST00000615540 TRGV4A0A0C4DH28 118 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 TP53TG1Q9Y2A0 90 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 AJUBAQ96IF1 538 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 GVINP1Q7Z2Y8 2422 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 Q8N8P6 123 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 PYGO2Q9BRQ0 406 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 DKK2Q9UBU2 259 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 FAM231BA6NCW3 169 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 FANCD2OSQ96PS1 177 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 KLF2Q9Y5W3 355 aaPredicted RBP6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 IGLV2-8P01709 118 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 UNQ9165/PRO28630Q6UXU0 137 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 APRG1Q8IVJ8 170 aa6.92□□□□□ -1.3
PDLIM5-222ENST00000615540 INSP01308 110 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 ZNF415Q09FC8 603 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 KLF5Q13887 457 aaPredicted RBP6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 Q6ZVH6 145 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 INTS1Q8N201 2190 aaKnown RBP6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 CRYGBP07316 175 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 FBXL19-AS1Q494R0 122 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 RNASE13Q5GAN3 156 aaKnown RBP6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 PRR14LQ5THK1 2151 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 CFAP47Q6ZTR5 3102 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 CRYGCP07315 174 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 CEP250Q9BV73 2442 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 HOXD3P31249 432 aaPredicted RBP6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 HSD52Q0P140 79 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 SMAGPQ0VAQ4 97 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 DEFB113Q30KQ7 82 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 TEX43Q6ZNM6 134 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 ZGRF1Q86YA3 2104 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 ZC2HC1BQ5TFG8 222 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 C11orf71Q6IPW1 123 aa6.91□□□□□ -1.3
PDLIM5-222ENST00000615540 CCDC140Q96MF4 163 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms