RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZNF479Q96JC4 524 aa11.95□□□□□ -0.5
UPF1-204ENST00000596842 NDPQ00604 133 aa11.95□□□□□ -0.5
UPF1-204ENST00000596842 ZNF80P51504 273 aaPredicted RBP11.95□□□□□ -0.5
UPF1-204ENST00000596842 PVRIGQ6DKI7 326 aa11.95□□□□□ -0.5
UPF1-204ENST00000596842 C8orf31Q8N9H6 132 aa11.95□□□□□ -0.5
UPF1-204ENST00000596842 FAM104BQ5XKR9 115 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 TEX29Q8N6K0 151 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 GATA3P23771 443 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 IFI27L1Q96BM0 104 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 C20orf78Q9BR46 151 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 SPRY2O43597 315 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 MS4A6AQ9H2W1 248 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 CELSR1Q9NYQ6 3014 aa11.94□□□□□ -0.5
UPF1-204ENST00000596842 H3BRM9 83 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 DEFB104AQ8WTQ1 72 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 HBDP02042 147 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 PRTN3P24158 256 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 PSMB2P49721 201 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 C5orf64Q2M2E5 130 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 C2orf91Q6ZV80 131 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 CSPG4Q6UVK1 2322 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 IGKV3-7A0A075B6H7 116 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 CCL21O00585 134 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 CYSLTR1Q9Y271 337 aa11.93□□□□□ -0.5
UPF1-204ENST00000596842 TIMD4Q96H15 378 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 LINC00527Q9UJ94 153 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 A0A096LNJ9 63 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 PRR25Q96S07 402 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 MRPL16Q9NX20 251 aaKnown RBP11.92□□□□□ -0.5
UPF1-204ENST00000596842 RPL7P18124 248 aaKnown RBP11.92□□□□□ -0.5
UPF1-204ENST00000596842 LEPP41159 167 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 INSL3P51460 131 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 FANCD2OSQ96PS1 177 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 KLK15Q9H2R5 256 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 TMEM160Q9NX00 188 aa11.92□□□□□ -0.5
UPF1-204ENST00000596842 PRAC2D3DTV9 90 aa11.91□□□□□ -0.5
UPF1-204ENST00000596842 DYNAPQ8N1N2 210 aa11.91□□□□□ -0.5
UPF1-204ENST00000596842 UBTD1Q9HAC8 227 aa11.91□□□□□ -0.5
UPF1-204ENST00000596842 NDUFS7O75251 213 aa11.9□□□□□ -0.5
UPF1-204ENST00000596842 IGHV3OR16-10A0A075B7F0 116 aa11.9□□□□□ -0.5
UPF1-204ENST00000596842 TRAV26-2A0A0B4J265 109 aa11.9□□□□□ -0.5
UPF1-204ENST00000596842 SRSF9Q13242 221 aaKnown RBP eCLIP11.9□□□□□ -0.5
UPF1-204ENST00000596842 RAB1BQ9H0U4 201 aa11.9□□□□□ -0.5
UPF1-204ENST00000596842 SORL1Q92673 2214 aa11.9□□□□□ -0.5
UPF1-204ENST00000596842 RPS20P60866 119 aaKnown RBP11.9□□□□□ -0.5
UPF1-204ENST00000596842 GLMPQ8WWB7 406 aa11.9□□□□□ -0.5
UPF1-204ENST00000596842 SPAG8Q99932 426 aaPredicted RBP11.9□□□□□ -0.5
UPF1-204ENST00000596842 SIVA1O15304 175 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 Q6AWC8 147 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 SCGB1D4Q6XE38 83 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 GTSCR1Q86UQ5 136 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 FOXC2Q99958 501 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 HIVEP3Q5T1R4 2406 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 HIF1ANQ9NWT6 349 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 CLEC19AQ6UXS0 136 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 IL17RELQ6ZVW7 336 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 MAP1LC3AQ9H492 121 aa11.89□□□□□ -0.51
UPF1-204ENST00000596842 C15orf32Q32M92 178 aa11.88□□□□□ -0.51
UPF1-204ENST00000596842 LYPD1Q8N2G4 141 aa11.88□□□□□ -0.51
UPF1-204ENST00000596842 CDSNQ15517 529 aa11.88□□□□□ -0.51
UPF1-204ENST00000596842 ZFAND6Q6FIF0 208 aa11.88□□□□□ -0.51
UPF1-204ENST00000596842 PIP4P2Q8N4L2 257 aa11.88□□□□□ -0.51
UPF1-204ENST00000596842 SMAD7O15105 426 aaKnown RBP11.87□□□□□ -0.51
UPF1-204ENST00000596842 Q6ZQT7 251 aa11.87□□□□□ -0.51
UPF1-204ENST00000596842 G3V318 75 aa11.87□□□□□ -0.51
UPF1-204ENST00000596842 VMO1Q7Z5L0 202 aa11.87□□□□□ -0.51
UPF1-204ENST00000596842 HRNRQ86YZ3 2850 aaPredicted RBP11.87□□□□□ -0.51
UPF1-204ENST00000596842 WI2-2373I1.2A0A1W2PRP0 233 aa11.87□□□□□ -0.51
UPF1-204ENST00000596842 OVOL3O00110 214 aa11.87□□□□□ -0.51
UPF1-204ENST00000596842 MRPS12O15235 138 aaKnown RBP11.87□□□□□ -0.51
UPF1-204ENST00000596842 MT-ATP8P03928 68 aa11.87□□□□□ -0.51
UPF1-204ENST00000596842 RPL11P62913 178 aaKnown RBP11.87□□□□□ -0.51
UPF1-204ENST00000596842 PRSS29PA6NIE9 313 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 HOXB4P17483 251 aaPredicted RBP11.86□□□□□ -0.51
UPF1-204ENST00000596842 Q1RN00 199 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 IGLV11-55A0A075B6I3 123 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 TRAV8-2A0A0B4J237 113 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 CTSGP08311 255 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 GAGE5Q13069 117 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 GAGE6Q13070 117 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 SNCGO76070 127 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 ZNF562Q6V9R5 426 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 TMEM158Q8WZ71 300 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 PTH2Q96A98 100 aa11.86□□□□□ -0.51
UPF1-204ENST00000596842 FABP5P3A8MUU1 101 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 LY6LH3BQJ8 138 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 FXYD2P54710 66 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 EMP1P54849 157 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 CFHR4Q92496 578 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 SMAD5-AS1Q9Y6J3 95 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 IGKV2D-26A0A0A0MRZ7 120 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 TNFRSF6BO95407 300 aa11.85□□□□□ -0.51
UPF1-204ENST00000596842 BEX4Q9NWD9 120 aaPredicted RBP11.85□□□□□ -0.51
UPF1-204ENST00000596842 F8W735 103 aaPredicted RBP11.84□□□□□ -0.51
UPF1-204ENST00000596842 TRGV3P03979 118 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 SMIM17P0DL12 118 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 DEFB1P60022 68 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 SPANXN1Q5VSR9 72 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 GAGE2BQ13066 116 aa11.84□□□□□ -0.51
UPF1-204ENST00000596842 LGALS9BQ3B8N2 356 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms