RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 FAM167A-AS1Q96KT0 104 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 TMPRSS5Q9H3S3 457 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 SMDT1Q9H4I9 107 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 DNAJC4Q9NNZ3 241 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 BIN3Q9NQY0 253 aa7.34□□□□□ -1.23
LIG1-213ENST00000596672 TRAV1-1A0A0B4J248 108 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 COX7A2P2O60397 106 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 PYYP10082 97 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 DAD1P61803 113 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 ERCC8Q13216 396 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 PEA15Q15121 130 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 GUK1Q16774 197 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 MIR17HGQ75NE6 70 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 IQCF2Q8IXL9 164 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 LINC00612Q8N6U2 182 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 FAM210BQ96KR6 192 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 LINC01587Q99440 93 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 TMEM208Q9BTX3 173 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 EIF5A2Q9GZV4 153 aaKnown RBP7.33□□□□□ -1.24
LIG1-213ENST00000596672 SMCO4Q9NRQ5 59 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 GNG13Q9P2W3 67 aa7.33□□□□□ -1.24
LIG1-213ENST00000596672 RBFOX3A6NFN3 312 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 FAM74A7A6NL05 159 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 NPIPB6E9PJ23 425 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 HTN1P15515 57 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 TAS2R60P59551 318 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 LGALS9BQ3B8N2 356 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 FAM74A3Q4VXF1 159 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 BPIFA4PQ86YQ2 179 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 OR1L4Q8NGR5 311 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 FAM19A4Q96LR4 140 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 NOP10Q9NPE3 64 aaKnown RBP7.32□□□□□ -1.24
LIG1-213ENST00000596672 FUT9Q9Y231 359 aa7.32□□□□□ -1.24
LIG1-213ENST00000596672 TRBV19A0A075B6N1 114 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 LYRM9A8MSI8 78 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 C9JQL5 133 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 J3KRW8 73 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 HOXA5P20719 270 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 CDKN1BP46527 198 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 RAB5BP61020 215 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 PRR9Q5T870 116 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 C15orf54Q8N8G6 183 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 ZNF503Q96F45 646 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 SLC50A1Q9BRV3 221 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 SLC25A2Q9BXI2 301 aa7.31□□□□□ -1.24
LIG1-213ENST00000596672 TEX48A0A1B0GUV7 120 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 PRSS29PA6NIE9 313 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 CXorf1O96002 111 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 SFTA3P0C7M3 94 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 STAG3L2P0CL84 134 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 STAG3L3P0CL85 134 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 ARL14EPLP0DKL9 152 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 ICAM4Q14773 271 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 RNF212Q495C1 297 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 LINC00518Q8N0U6 118 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 EXOC3-AS1Q8N2X6 119 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 ZNRF2Q8NHG8 242 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 RXFP4Q8TDU9 374 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 PFDN5Q99471 154 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 KRTAP1-5Q9BYS1 174 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 AGPAT4-IT1Q9H0P7 198 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 LINC00588Q9Y4M8 146 aa7.3□□□□□ -1.24
LIG1-213ENST00000596672 FAT1Q14517 4588 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 TRAV12-3A0A0B4J271 114 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 CBY3A6NI87 242 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 F5H768 121 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 ZNF324O75467 553 aaPredicted RBP7.29□□□□□ -1.24
LIG1-213ENST00000596672 IFNA1P01562 189 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 ADCYAP1P18509 176 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 GCHFRP30047 84 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 S100A7P31151 101 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 UBE2G2P60604 165 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 S100A12P80511 92 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 ZNF506Q5JVG8 444 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 LINC00336Q6ZUF6 198 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 C11orf72Q8NBR9 251 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 VGLL1Q99990 258 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 MRPL32Q9BYC8 188 aaKnown RBP7.29□□□□□ -1.24
LIG1-213ENST00000596672 KRTAP4-5Q9BYR2 181 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 TMEM14CQ9P0S9 112 aa7.29□□□□□ -1.24
LIG1-213ENST00000596672 IGKV2-40A0A087WW87 121 aaPredicted RBP7.28□□□□□ -1.24
LIG1-213ENST00000596672 C1orf196B1AJZ1 125 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 H7BYZ3 331 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 OR7C2O60412 319 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 PAGE4O60829 102 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 IGKV2D-40P01614 121 aaPredicted RBP7.28□□□□□ -1.24
LIG1-213ENST00000596672 HIST1H1EP10412 219 aaKnown RBP7.28□□□□□ -1.24
LIG1-213ENST00000596672 BCL2P10415 239 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 PPT1P50897 306 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 CEBPGP53567 150 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 TAS2R45P59539 299 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 RHEBQ15382 184 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 Q6ZTI0 123 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 ZNF575Q86XF7 245 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 TMEM256Q8N2U0 113 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 ZFAND2AQ8N6M9 145 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 TMEM263Q8WUH6 116 aaKnown RBP7.28□□□□□ -1.24
LIG1-213ENST00000596672 FXYD5Q96DB9 178 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 VAX2Q9UIW0 290 aa7.28□□□□□ -1.24
LIG1-213ENST00000596672 TP53TG3Q9ULZ0 132 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms