RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 ATP5J2P56134 94 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 Q6ZT83 130 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 FAM90A1Q86YD7 464 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 MLST8Q9BVC4 326 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 A0A1W2PPI3 338 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 TCL1BO95988 128 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 PPP1R17O96001 155 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 KRTAP27-1Q3LI81 207 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 CHCHD5Q9BSY4 110 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 CSPG4Q6UVK1 2322 aa9.76□□□□□ -0.85
LIG1-207ENST00000594759 SRRM4A7MD48 611 aaKnown RBP9.75□□□□□ -0.85
LIG1-207ENST00000594759 SRRM5B3KS81 715 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 M0R2P5 195 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 TM4SF5O14894 197 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 WT1-ASQ06250 92 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 TRBV19A0A075B6N1 114 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 IGHV3OR16-8A0A075B7F1 116 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 TRACP01848 142 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 GATA1P15976 413 aaPredicted RBP9.75□□□□□ -0.85
LIG1-207ENST00000594759 CCL3L1P16619 93 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 MAPKAPK5-AS1Q8N8E1 139 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 RNF138Q8WVD3 245 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 TMEM190Q8WZ59 177 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 IGKV1D-17A0A075B6S4 117 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 CFC1BP0CG36 223 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 CFC1P0CG37 223 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 DDB2Q92466 427 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 PIMREGQ9BSJ6 248 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 CDIP1Q9H305 208 aa9.75□□□□□ -0.85
LIG1-207ENST00000594759 MYO18BQ8IUG5 2567 aa9.74□□□□□ -0.85
LIG1-207ENST00000594759 CCL21O00585 134 aa9.74□□□□□ -0.85
LIG1-207ENST00000594759 LGALS1P09382 135 aaKnown RBP9.74□□□□□ -0.85
LIG1-207ENST00000594759 MORN3Q6PF18 240 aaPredicted RBP9.74□□□□□ -0.85
LIG1-207ENST00000594759 DTX2Q86UW9 622 aa9.74□□□□□ -0.85
LIG1-207ENST00000594759 DEFB104AQ8WTQ1 72 aa9.74□□□□□ -0.85
LIG1-207ENST00000594759 PVRIGQ6DKI7 326 aa9.74□□□□□ -0.85
LIG1-207ENST00000594759 KLHL30-AS1Q8NEE0 82 aa9.74□□□□□ -0.85
LIG1-207ENST00000594759 SPANXDQ9BXN6 97 aa9.74□□□□□ -0.85
LIG1-207ENST00000594759 IGHV3OR16-13A0A075B7E8 117 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 IGHV3-74A0A0B4J1X5 117 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 C2orf66Q6UXQ4 117 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 IL17RELQ6ZVW7 336 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 PTPN13Q12923 2485 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 TRANK1O15050 2925 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 CIRBPQ14011 172 aaKnown RBP9.73□□□□□ -0.85
LIG1-207ENST00000594759 Q8N1Y9 231 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 MSRB1Q9NZV6 116 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 NAV3Q8IVL0 2385 aa9.73□□□□□ -0.85
LIG1-207ENST00000594759 TRAV26-2A0A0B4J265 109 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 THAP8Q8NA92 274 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 AGRNO00468 2067 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 NPFFO15130 113 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 CD3EP07766 207 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 IGFL4Q6B9Z1 124 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 DGAT2L7PQ6IED9 249 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 PROP1O75360 226 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 LINC01620Q4KN68 170 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 TRPT1Q86TN4 253 aaKnown RBP9.72□□□□□ -0.85
LIG1-207ENST00000594759 C17orf77Q96MU5 243 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 SPANXCQ9NY87 97 aa9.72□□□□□ -0.85
LIG1-207ENST00000594759 CD7P09564 240 aa9.71□□□□□ -0.85
LIG1-207ENST00000594759 SHANK2-AS3Q9BTD1 123 aa9.71□□□□□ -0.85
LIG1-207ENST00000594759 DNAL4O96015 105 aa9.71□□□□□ -0.85
LIG1-207ENST00000594759 C16orf92Q96LL3 132 aa9.71□□□□□ -0.85
LIG1-207ENST00000594759 PRR25Q96S07 402 aa9.71□□□□□ -0.85
LIG1-207ENST00000594759 CR1LQ2VPA4 569 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 Q6ZS92 163 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 NFE4Q86UQ8 179 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 CITED2Q99967 270 aaPredicted RBP9.71□□□□□ -0.86
LIG1-207ENST00000594759 MALRD1Q5VYJ5 2156 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 IGKV3-7A0A075B6H7 116 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 IGHV3-23P01764 117 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 GP9P14770 177 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 NPC2P61916 151 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 FAM74A4Q5TZK3 123 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 ZNF493Q6ZR52 646 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 CARD19Q96LW7 228 aa9.71□□□□□ -0.86
LIG1-207ENST00000594759 EGR2P11161 476 aaPredicted RBP9.7□□□□□ -0.86
LIG1-207ENST00000594759 PRB3Q04118 309 aaPredicted RBP9.7□□□□□ -0.86
LIG1-207ENST00000594759 C1orf43Q9BWL3 253 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 TMEM14CQ9P0S9 112 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 NDUFA11Q86Y39 141 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 C1orf159Q96HA4 380 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 TNFRSF18Q9Y5U5 241 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 SZT2Q5T011 3432 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 RNF182Q8N6D2 247 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 PPDPFQ9H3Y8 114 aa9.7□□□□□ -0.86
LIG1-207ENST00000594759 CENPVL3A0A0U1RRI6 287 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 DUX3Q96PT4 197 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 CPAMD8Q8IZJ3 1885 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 IGHV3-66A0A0C4DH42 116 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 SUMO2P61956 95 aaKnown RBP9.69□□□□□ -0.86
LIG1-207ENST00000594759 EIF4EBP1Q13541 118 aaPredicted RBP9.69□□□□□ -0.86
LIG1-207ENST00000594759 MDS2Q8NDY4 140 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 SMIM2Q9BVW6 85 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 C21orf62Q9NYP8 219 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 VPREB3Q9UKI3 123 aa9.69□□□□□ -0.86
LIG1-207ENST00000594759 TRGV11A0A075B6L2 103 aa9.68□□□□□ -0.86
LIG1-207ENST00000594759 A4D1N5 150 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms