RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 X6R8D5 127 aa13.18□□□□□ -0.3
CCDC40-213ENST00000574933 SMIM9A6NGZ8 99 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 ZNF324O75467 553 aaPredicted RBP13.17□□□□□ -0.3
CCDC40-213ENST00000574933 GPX1P07203 203 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 RAB14P61106 215 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 CLLU1Q5K131 121 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 PRR9Q5T870 116 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 Q6AWC8 147 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 COX8CQ7Z4L0 72 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 NDFIP1Q9BT67 221 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 TREM1Q9NP99 234 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 ZFP30Q9Y2G7 519 aa13.17□□□□□ -0.3
CCDC40-213ENST00000574933 UBE2G1P62253 170 aa13.16□□□□□ -0.3
CCDC40-213ENST00000574933 PRNTQ86SH4 94 aa13.16□□□□□ -0.3
CCDC40-213ENST00000574933 U3KQK5 164 aa13.16□□□□□ -0.3
CCDC40-213ENST00000574933 HUWE1Q7Z6Z7 4374 aaKnown RBP13.16□□□□□ -0.3
CCDC40-213ENST00000574933 TMEM250H0YL14 139 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 H7BYZ3 331 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 RGS13O14921 159 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 LTAP01374 205 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 MIFP14174 115 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 TAS2R60P59551 318 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 BTN1A1Q13410 526 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 TOR2AQ5JU69 321 aa13.15□□□□□ -0.3
CCDC40-213ENST00000574933 TRAV12-3A0A0B4J271 114 aa13.14□□□□□ -0.31
CCDC40-213ENST00000574933 J3KRW8 73 aa13.14□□□□□ -0.31
CCDC40-213ENST00000574933 RNASE4P34096 147 aaKnown RBP13.14□□□□□ -0.31
CCDC40-213ENST00000574933 C8orf49Q96NF6 230 aa13.14□□□□□ -0.31
CCDC40-213ENST00000574933 LINC00467Q9BRT7 94 aa13.14□□□□□ -0.31
CCDC40-213ENST00000574933 NIPSNAP3BQ9BS92 247 aa13.14□□□□□ -0.31
CCDC40-213ENST00000574933 RPL35P42766 123 aaKnown RBP13.13□□□□□ -0.31
CCDC40-213ENST00000574933 SMUG1Q53HV7 270 aa13.13□□□□□ -0.31
CCDC40-213ENST00000574933 Q8NAQ8 132 aa13.13□□□□□ -0.31
CCDC40-213ENST00000574933 PYGO2Q9BRQ0 406 aa13.13□□□□□ -0.31
CCDC40-213ENST00000574933 TMEM208Q9BTX3 173 aa13.13□□□□□ -0.31
CCDC40-213ENST00000574933 EIF5A2Q9GZV4 153 aaKnown RBP13.13□□□□□ -0.31
CCDC40-213ENST00000574933 SMDT1Q9H4I9 107 aa13.13□□□□□ -0.31
CCDC40-213ENST00000574933 TMEM183AQ8IXX5 376 aa13.12□□□□□ -0.31
CCDC40-213ENST00000574933 LINC01587Q99440 93 aa13.12□□□□□ -0.31
CCDC40-213ENST00000574933 DERL1Q9BUN8 251 aa13.12□□□□□ -0.31
CCDC40-213ENST00000574933 MLST8Q9BVC4 326 aa13.12□□□□□ -0.31
CCDC40-213ENST00000574933 C11orf68Q9H3H3 251 aaKnown RBP13.12□□□□□ -0.31
CCDC40-213ENST00000574933 MED9Q9NWA0 146 aa13.12□□□□□ -0.31
CCDC40-213ENST00000574933 IGHV3OR16-12A0A075B7B8 117 aa13.11□□□□□ -0.31
CCDC40-213ENST00000574933 RRN3P1Q2M238 152 aa13.11□□□□□ -0.31
CCDC40-213ENST00000574933 SMIM12Q96EX1 92 aa13.11□□□□□ -0.31
CCDC40-213ENST00000574933 TRAV21A0A0B4J279 112 aa13.1□□□□□ -0.31
CCDC40-213ENST00000574933 GCGP01275 180 aa13.1□□□□□ -0.31
CCDC40-213ENST00000574933 SRP19P09132 144 aaKnown RBP13.1□□□□□ -0.31
CCDC40-213ENST00000574933 ZNF80P51504 273 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-213ENST00000574933 Q6ZQT7 251 aa13.1□□□□□ -0.31
CCDC40-213ENST00000574933 BAGE2Q86Y30 109 aa13.1□□□□□ -0.31
CCDC40-213ENST00000574933 IGHV4-28A0A0C4DH34 117 aa13.09□□□□□ -0.31
CCDC40-213ENST00000574933 PFN1P07737 140 aaKnown RBP13.09□□□□□ -0.31
CCDC40-213ENST00000574933 PEA15Q15121 130 aa13.09□□□□□ -0.31
CCDC40-213ENST00000574933 TDRG1Q3Y452 100 aa13.09□□□□□ -0.31
CCDC40-213ENST00000574933 ANXA2RQ3ZCQ2 193 aa13.09□□□□□ -0.31
CCDC40-213ENST00000574933 ZNF493Q6ZR52 646 aa13.09□□□□□ -0.31
CCDC40-213ENST00000574933 ZC2HC1AQ96GY0 325 aa13.09□□□□□ -0.31
CCDC40-213ENST00000574933 EDA2RQ9HAV5 297 aa13.09□□□□□ -0.31
CCDC40-213ENST00000574933 TRBV20OR9-2A0A075B6H5 130 aa13.08□□□□□ -0.32
CCDC40-213ENST00000574933 IGHV1OR15-1A0A075B7D0 117 aa13.08□□□□□ -0.32
CCDC40-213ENST00000574933 RAB19A4D1S5 217 aa13.08□□□□□ -0.32
CCDC40-213ENST00000574933 TMEM189A5PLL7 270 aa13.08□□□□□ -0.32
CCDC40-213ENST00000574933 ZNF705GA8MUZ8 300 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-213ENST00000574933 C9JCJ5 164 aa13.08□□□□□ -0.32
CCDC40-213ENST00000574933 ZNF674Q2M3X9 581 aa13.08□□□□□ -0.32
CCDC40-213ENST00000574933 EIF4E3Q8N5X7 224 aaKnown RBP13.08□□□□□ -0.32
CCDC40-213ENST00000574933 PARLQ9H300 379 aa13.08□□□□□ -0.32
CCDC40-213ENST00000574933 FABP5P3A8MUU1 101 aa13.07□□□□□ -0.32
CCDC40-213ENST00000574933 IGLV2-8P01709 118 aa13.07□□□□□ -0.32
CCDC40-213ENST00000574933 CENPWQ5EE01 88 aa13.07□□□□□ -0.32
CCDC40-213ENST00000574933 RNASE8Q8TDE3 154 aaKnown RBP13.07□□□□□ -0.32
CCDC40-213ENST00000574933 TMEM263Q8WUH6 116 aaKnown RBP13.07□□□□□ -0.32
CCDC40-213ENST00000574933 PLAC8L1A1L4L8 177 aa13.06□□□□□ -0.32
CCDC40-213ENST00000574933 C9JQL5 133 aa13.06□□□□□ -0.32
CCDC40-213ENST00000574933 PRM2P04554 102 aa13.06□□□□□ -0.32
CCDC40-213ENST00000574933 AZU1P20160 251 aa13.06□□□□□ -0.32
CCDC40-213ENST00000574933 GNG4P50150 75 aa13.06□□□□□ -0.32
CCDC40-213ENST00000574933 CRIP1P50238 77 aa13.06□□□□□ -0.32
CCDC40-213ENST00000574933 SRSF3P84103 164 aaKnown RBP13.06□□□□□ -0.32
CCDC40-213ENST00000574933 C16orf74Q96GX8 76 aa13.06□□□□□ -0.32
CCDC40-213ENST00000574933 A0A0J9YWU9 116 aa13.05□□□□□ -0.32
CCDC40-213ENST00000574933 FAM162BQ5T6X4 162 aa13.05□□□□□ -0.32
CCDC40-213ENST00000574933 C11orf21Q9P2W6 132 aa13.05□□□□□ -0.32
CCDC40-213ENST00000574933 MUC4Q99102 2169 aa13.04□□□□□ -0.32
CCDC40-213ENST00000574933 IBA57Q5T440 356 aaKnown RBP13.04□□□□□ -0.32
CCDC40-213ENST00000574933 FAM159AQ6UWV7 190 aa13.04□□□□□ -0.32
CCDC40-213ENST00000574933 NHLRC2Q8NBF2 726 aa13.04□□□□□ -0.32
CCDC40-213ENST00000574933 C11orf72Q8NBR9 251 aa13.04□□□□□ -0.32
CCDC40-213ENST00000574933 KCNS1Q96KK3 526 aa13.04□□□□□ -0.32
CCDC40-213ENST00000574933 TP53TG3Q9ULZ0 132 aa13.04□□□□□ -0.32
CCDC40-213ENST00000574933 LY96Q9Y6Y9 160 aa13.04□□□□□ -0.32
CCDC40-213ENST00000574933 SH2D1AO60880 128 aa13.03□□□□□ -0.32
CCDC40-213ENST00000574933 HTN1P15515 57 aa13.03□□□□□ -0.32
CCDC40-213ENST00000574933 MUC21Q5SSG8 566 aa13.03□□□□□ -0.32
CCDC40-213ENST00000574933 BIN3Q9NQY0 253 aa13.03□□□□□ -0.32
CCDC40-213ENST00000574933 CBY3A6NI87 242 aa13.02□□□□□ -0.33
CCDC40-213ENST00000574933 DEFB4AO15263 64 aa13.02□□□□□ -0.33
CCDC40-213ENST00000574933 FAM74A3Q4VXF1 159 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms