RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 GATA1P15976 413 aaPredicted RBP8.32□□□□□ -1.08
CCDC40-207ENST00000572253 FBXL19-AS1Q494R0 122 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 HIF1ANQ9NWT6 349 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 SPG11Q96JI7 2443 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 HLA-DRB4P13762 266 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 HLA-DRB4X5D2U9 266 aa8.32□□□□□ -1.08
CCDC40-207ENST00000572253 IGKV2D-26A0A0A0MRZ7 120 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 IGHV3-66A0A0C4DH42 116 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 FXYD2P54710 66 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 EEF1AKMT3Q96AZ1 226 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 NHP2Q9NX24 153 aaKnown RBP8.31□□□□□ -1.08
CCDC40-207ENST00000572253 HHLA3Q9XRX5 114 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 ARHGAP32A7KAX9 2087 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 TRBV25-1A0A075B6N4 114 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 CCL21O00585 134 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 SRSF1Q07955 248 aaKnown RBP eCLIP8.31□□□□□ -1.08
CCDC40-207ENST00000572253 Q8N9W7 124 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 MRPL53Q96EL3 112 aaKnown RBP8.31□□□□□ -1.08
CCDC40-207ENST00000572253 AGPAT4-IT1Q9H0P7 198 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 GAS8-AS1O95177 125 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 GRNP28799 593 aaKnown RBP8.31□□□□□ -1.08
CCDC40-207ENST00000572253 CLEC19AQ6UXS0 136 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 NEGR1Q7Z3B1 354 aa8.31□□□□□ -1.08
CCDC40-207ENST00000572253 ANKRD11Q6UB99 2663 aaPredicted RBP8.31□□□□□ -1.08
CCDC40-207ENST00000572253 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.31□□□□□ -1.08
CCDC40-207ENST00000572253 CLEC2AQ6UVW9 174 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 CEND1Q8N111 149 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 IGHV3OR16-13A0A075B7E8 117 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 IGHV3-74A0A0B4J1X5 117 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 TRAV40A0A0B4J280 105 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 IGKV3D-20A0A0C4DH25 116 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 PLNP26678 52 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 TAL2Q16559 108 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 TTTY13Q9BZ97 58 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 ZFAND3Q9H8U3 227 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 MRPL35Q9NZE8 188 aaKnown RBP8.3□□□□□ -1.08
CCDC40-207ENST00000572253 PRSS47A8MTI9 375 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 PIEZO2Q9H5I5 2752 aa8.3□□□□□ -1.08
CCDC40-207ENST00000572253 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.29□□□□□ -1.08
CCDC40-207ENST00000572253 MSRB2Q9Y3D2 182 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 MUC6Q6W4X9 2439 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 BOD1L1Q8NFC6 3051 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 A0A087WX48 190 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 TRGV3P03979 118 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 TM2D2Q9BX73 214 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 CACNA1AO00555 2505 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 ATP6V0E1O15342 81 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 MRAP2Q96G30 205 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 C16orf92Q96LL3 132 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 C8orf86Q6ZUL3 223 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 HIST1H4GQ99525 98 aa8.29□□□□□ -1.08
CCDC40-207ENST00000572253 IGLV2-18A0A075B6J9 118 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 IGHV3-49A0A0A0MS15 119 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 TRBV7-1A0A0A6YYK4 115 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 K7ERJ3 54 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 ZNF575Q86XF7 245 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 MGAQ8IWI9 3026 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 H7C1H1 209 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 ATP5G2Q06055 141 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 ORMDL2Q53FV1 153 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 SAMD13Q5VXD3 122 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 C9orf47Q6ZRZ4 202 aa8.28□□□□□ -1.08
CCDC40-207ENST00000572253 TRAV26-2A0A0B4J265 109 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 OR11H12B2RN74 326 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 H3BVH4 76 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 K7ENP7 123 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 S100A4P26447 101 aaKnown RBP8.27□□□□□ -1.09
CCDC40-207ENST00000572253 OR11H1Q8NG94 326 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 OR11H2Q8NH07 326 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 ZNF479Q96JC4 524 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 C11orf21Q9P2W6 132 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 FOXC1Q12948 553 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 NRACQ8N912 160 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 SMIM2Q9BVW6 85 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 UBE2E1P51965 193 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 C9orf139Q6ZV77 190 aa8.27□□□□□ -1.09
CCDC40-207ENST00000572253 PSMG3-AS1Q96PY0 264 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 SCGB3A1Q96QR1 104 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 SIRPDQ9H106 197 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 IGHV4-4A0A075B6R2 117 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 TRAV8-2A0A0B4J237 113 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 IGHV7-4-1A0A0J9YVY3 117 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 CLPSL1A2RUU4 121 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 C11orf71Q6IPW1 123 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 CCDC140Q96MF4 163 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 LENEPQ9Y5L5 61 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 TRAV12-1A0A0B4J245 112 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 F8VRH5 84 aa8.26□□□□□ -1.09
CCDC40-207ENST00000572253 CHTOPQ9Y3Y2 248 aaKnown RBP8.26□□□□□ -1.09
CCDC40-207ENST00000572253 IGLL5B9A064 214 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 G3V318 75 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 ZFP36P26651 326 aaKnown RBP8.25□□□□□ -1.09
CCDC40-207ENST00000572253 EFNA4P52798 201 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 OR10J6PQ8NGY7 276 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 TLN1Q9Y490 2541 aaKnown RBP8.25□□□□□ -1.09
CCDC40-207ENST00000572253 TMEM238C9JI98 176 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 E9PLD3 99 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 F8W1H4 67 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 KLK9Q2XQG4 91 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms