RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 GAGE2DQ9UEU5 116 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 ROS1P08922 2347 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 ZNF318Q5VUA4 2279 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 HLA-DRB4P13762 266 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 HLA-DRB4X5D2U9 266 aa12.09□□□□□ -0.47
CIITA-204ENST00000570546 SIVA1O15304 175 aa12.08□□□□□ -0.47
CIITA-204ENST00000570546 CKS1BP61024 79 aa12.08□□□□□ -0.47
CIITA-204ENST00000570546 NEGR1Q7Z3B1 354 aa12.08□□□□□ -0.47
CIITA-204ENST00000570546 SDHAF1A6NFY7 115 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 I3L3M4 83 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 CEND1Q8N111 149 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 TMEM86BQ8N661 226 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 OR11H6Q8NGC7 330 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 C11orf68Q9H3H3 251 aaKnown RBP12.08□□□□□ -0.48
CIITA-204ENST00000570546 GATA3P23771 443 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 IGFBPL1Q8WX77 278 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 CFHR4Q92496 578 aa12.08□□□□□ -0.48
CIITA-204ENST00000570546 A0A1W2PPM0 123 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 KNCNA6PVL3 124 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 SHANK1Q9Y566 2161 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 IGHV1OR15-1A0A075B7D0 117 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 CRPP02741 224 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 C9JAW5 83 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 IGLV2-23P01705 113 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 RPL35AP18077 110 aaKnown RBP12.07□□□□□ -0.48
CIITA-204ENST00000570546 C1orf122Q6ZSJ8 110 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 TRAV13-1A0A0B4J241 112 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 K7EP13 123 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 P0C879 139 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 F8VRH5 84 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 K7EIM0 57 aa12.07□□□□□ -0.48
CIITA-204ENST00000570546 IGKV1OR2-108A0A075B7D4 117 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 NPBQ8NG41 125 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 TRAV12-2A0A075B6T6 113 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 RBAKDNA6NC62 111 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 GRNP28799 593 aaKnown RBP12.06□□□□□ -0.48
CIITA-204ENST00000570546 AGPAT4-IT1Q9H0P7 198 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 Q6ZVH6 145 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 POLEQ07864 2286 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 C20orf78Q9BR46 151 aa12.06□□□□□ -0.48
CIITA-204ENST00000570546 A0A087WX48 190 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 IGKV1-17P01599 117 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 LINC00173Q6ZV60 143 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 SEM1Q6ZVN7 128 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 PKDREJQ9NTG1 2253 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 IGHV7-4-1A0A0J9YVY3 117 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 K7ERJ3 54 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 SLC25A20O43772 301 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 TAL2Q16559 108 aa12.05□□□□□ -0.48
CIITA-204ENST00000570546 CR1LQ2VPA4 569 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 ZNF295-AS1Q8N0V1 137 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 MUC22E2RYF6 1773 aaPredicted RBP12.04□□□□□ -0.48
CIITA-204ENST00000570546 TRAV8-3A0A0A6YYJ7 113 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 PAX4O43316 350 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 CDKN1BP46527 198 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 FOXE3Q13461 319 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 F8W1H4 67 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 LEPROTO15243 131 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 GTSF1Q8WW33 167 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 MRPL53Q96EL3 112 aaKnown RBP12.04□□□□□ -0.48
CIITA-204ENST00000570546 INS-IGF2F8WCM5 200 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 SPINK8P0C7L1 97 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 PRIMA1Q86XR5 153 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 GATD1Q8NB37 220 aa12.04□□□□□ -0.48
CIITA-204ENST00000570546 RNF223E7ERA6 249 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 RHODO00212 210 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 FRMD6-AS1P0C7T7 363 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 PLA2G5P39877 138 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 MSMPQ1L6U9 139 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 E7EUB6 86 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 LINC01619G3V211 115 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 IGF2-ASQ6U949 168 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 IGLV11-55A0A075B6I3 123 aa12.03□□□□□ -0.48
CIITA-204ENST00000570546 KLF12Q9Y4X4 402 aa12.02□□□□□ -0.48
CIITA-204ENST00000570546 TRBV20-1A0A075B6N2 111 aa12.02□□□□□ -0.49
CIITA-204ENST00000570546 GATA1P15976 413 aaPredicted RBP12.02□□□□□ -0.49
CIITA-204ENST00000570546 PCP2Q8IVA1 136 aa12.02□□□□□ -0.49
CIITA-204ENST00000570546 MAPK1IP1LQ8NDC0 245 aa12.02□□□□□ -0.49
CIITA-204ENST00000570546 IGHV3-16A0A0C4DH30 117 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 DEFB125Q8N687 156 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 C1QTNF4Q9BXJ3 329 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 XCL2Q9UBD3 114 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 TEX22C9J3V5 150 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 WISP2O76076 250 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 BRWD1-AS2P59051 145 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 S100A7L2Q5SY68 101 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 SCRT2Q9NQ03 307 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 MRPL36Q9P0J6 103 aaKnown RBP12.01□□□□□ -0.49
CIITA-204ENST00000570546 IGHV7-81A0A0B4J1V7 117 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 SPTBN2O15020 2390 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 H3BUA1 57 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 GHRHP01286 108 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 LINC01545Q5VT33 79 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 TSSC4Q9Y5U2 329 aaPredicted RBP12.01□□□□□ -0.49
CIITA-204ENST00000570546 GNRH2O43555 120 aa12.01□□□□□ -0.49
CIITA-204ENST00000570546 DOCK10Q96BY6 2186 aa12□□□□□ -0.49
CIITA-204ENST00000570546 F6UB75 175 aa12□□□□□ -0.49
CIITA-204ENST00000570546 TCF15Q12870 199 aa12□□□□□ -0.49
CIITA-204ENST00000570546 ETDBQ3ZM63 59 aa12□□□□□ -0.49
CIITA-204ENST00000570546 TCTEX1D4Q5JR98 221 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms