RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MSRB1Q9NZV6 116 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.62□□□□□ -1.19
VPS53-206ENST00000570359 F6UB75 175 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 IGF1P05019 195 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 TWIST1Q15672 202 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 AMN1Q8IY45 258 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 ZNF738Q8NE65 137 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 WIPF2Q8TF74 440 aaPredicted RBP7.62□□□□□ -1.19
VPS53-206ENST00000570359 SMIM12Q96EX1 92 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 PMCHL2Q9BQD1 86 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 BEX4Q9NWD9 120 aaPredicted RBP7.62□□□□□ -1.19
VPS53-206ENST00000570359 NOTCH3Q9UM47 2321 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 A6NDX4 124 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 TCTAP57738 103 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 ATP5L2Q7Z4Y8 100 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 NDFIP1Q9BT67 221 aa7.62□□□□□ -1.19
VPS53-206ENST00000570359 LOC102724200A0A096LPH7 203 aaPredicted RBP7.61□□□□□ -1.19
VPS53-206ENST00000570359 NPIPB6E9PJ23 425 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 CTRLP40313 264 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 MEGF9Q9H1U4 602 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 UQCR10Q9UDW1 63 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 HELZ2Q9BYK8 2649 aaKnown RBP7.61□□□□□ -1.19
VPS53-206ENST00000570359 RIGQ13278 110 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 FOXE3Q13461 319 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 CT83Q5H943 113 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 LINC01356Q8N9X3 169 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 URB1-AS1Q96HZ7 61 aa7.61□□□□□ -1.19
VPS53-206ENST00000570359 TRAV8-2A0A0B4J237 113 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 Q5PR19 223 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 C20orf173Q96LM9 149 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 AGPAT4-IT1Q9H0P7 198 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 TP73-AS1Q9UF72 201 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 D6R8Y8 96 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 CIDEAO60543 219 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 TMEM78Q5T7P6 136 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 EBLN2Q6P2I7 272 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 RASL11AQ6T310 242 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 Q96MF0 132 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 COX11Q9Y6N1 276 aa7.6□□□□□ -1.19
VPS53-206ENST00000570359 FAM181BA6NEQ2 426 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 FAM223BA6NKX1 122 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 IGKV3-20P01619 116 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 IGHG2P01859 326 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 FAM106AQ4KMX7 169 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 FAM223AQ8IWN6 122 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 STPG4Q8N801 248 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 FER1L6-AS1Q8NA97 138 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 GFRA4Q9GZZ7 299 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 LAMTOR2Q9Y2Q5 125 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 AGRNO00468 2067 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 ITPR2Q14571 2701 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 HSBP1L1C9JCN9 74 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 EVI2AP22794 236 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 RAB9AP51151 201 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 HIST1H1AQ02539 215 aaPredicted RBP7.59□□□□□ -1.19
VPS53-206ENST00000570359 KHDC1LQ5JSQ8 128 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 SPATA12Q7Z6I5 190 aa7.59□□□□□ -1.19
VPS53-206ENST00000570359 MRPS16Q9Y3D3 137 aaKnown RBP7.59□□□□□ -1.19
VPS53-206ENST00000570359 IGHV1-24A0A0C4DH33 117 aa7.59□□□□□ -1.2
VPS53-206ENST00000570359 HAX1O00165 279 aa7.59□□□□□ -1.2
VPS53-206ENST00000570359 KIR3DS1Q14943 382 aa7.59□□□□□ -1.2
VPS53-206ENST00000570359 SPATA45Q537H7 98 aa7.59□□□□□ -1.2
VPS53-206ENST00000570359 PRSS3P2Q8NHM4 247 aa7.59□□□□□ -1.2
VPS53-206ENST00000570359 NPFFR1Q9GZQ6 430 aa7.59□□□□□ -1.2
VPS53-206ENST00000570359 UFC1Q9Y3C8 167 aa7.59□□□□□ -1.2
VPS53-206ENST00000570359 GAS8-AS1O95177 125 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 SLC25A16P16260 332 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 C11orf21Q9P2W6 132 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 CR1P17927 2039 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 HOXA3O43365 443 aaPredicted RBP7.58□□□□□ -1.2
VPS53-206ENST00000570359 IGLC3P0DOY3 106 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 S100A7P31151 101 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 LOXL1Q08397 574 aaPredicted RBP7.58□□□□□ -1.2
VPS53-206ENST00000570359 C19orf54Q5BKX5 351 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 Q8N976 141 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 DUX3Q96PT4 197 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 SLC50A1Q9BRV3 221 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 RHPN1-AS1Q9BWJ2 59 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 HECTD1Q9ULT8 2610 aa7.58□□□□□ -1.2
VPS53-206ENST00000570359 FABP5P3A8MUU1 101 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 IFI27P40305 119 aaPredicted RBP7.57□□□□□ -1.2
VPS53-206ENST00000570359 DEFB136Q30KP8 78 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 PRR9Q5T870 116 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 KLHDC1Q8N7A1 406 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 GATA1P15976 413 aaPredicted RBP7.57□□□□□ -1.2
VPS53-206ENST00000570359 BMI1P35226 326 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 FA2HQ7L5A8 372 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 C11orf44Q8N8P7 122 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 DEFB104AQ8WTQ1 72 aa7.57□□□□□ -1.2
VPS53-206ENST00000570359 TRBV6-1A0A0K0K1D8 114 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 TMEM238LA0A1B0GVL6 79 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 LEPROTL1O95214 131 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 IGHV4-31P0DP07 118 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 CKS2P33552 79 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 HNRNPA3P51991 378 aaKnown RBP7.56□□□□□ -1.2
VPS53-206ENST00000570359 KLF5Q13887 457 aaPredicted RBP7.56□□□□□ -1.2
VPS53-206ENST00000570359 C16orf54Q6UWD8 224 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 PRELID3AQ96N28 172 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 CSTL1Q9H114 145 aa7.56□□□□□ -1.2
VPS53-206ENST00000570359 TRAV26-2A0A0B4J265 109 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms