RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 OR2D3Q8NGH3 330 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 DYNLRB2Q8TF09 96 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 SPAG8Q99932 426 aaPredicted RBP6.03□□□□□ -1.44
VPS39-213ENST00000570062 SMR3AQ99954 134 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 CSPG4Q6UVK1 2322 aa6.03□□□□□ -1.44
VPS39-213ENST00000570062 TRAV8-1A0A0A6YYK1 113 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 TMEM189A5PLL7 270 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 F2Z2F3 143 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 K7EQG2 157 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 HLA-DQA1P01909 254 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 RIGQ13278 110 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 OR8A1Q8NGG7 326 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 DCANP1Q8TF63 244 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 KRTAP4-11Q9BYQ6 195 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 AGPAT4-IT1Q9H0P7 198 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 MS4A6AQ9H2W1 248 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 TRAPPC1Q9Y5R8 145 aa6.02□□□□□ -1.45
VPS39-213ENST00000570062 IGKV2-40A0A087WW87 121 aaPredicted RBP6.01□□□□□ -1.45
VPS39-213ENST00000570062 TRAV21A0A0B4J279 112 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 KRTAP9-7A8MTY7 169 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 IGKV2D-40P01614 121 aaPredicted RBP6.01□□□□□ -1.45
VPS39-213ENST00000570062 CD28P10747 220 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 CRISP2P16562 243 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 LEPP41159 167 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 FOXI2Q6ZQN5 318 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 RNF182Q8N6D2 247 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 NHLRC2Q8NBF2 726 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 DLX4Q92988 240 aaPredicted RBP6.01□□□□□ -1.45
VPS39-213ENST00000570062 ZC2HC1AQ96GY0 325 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 SGK494Q96LW2 274 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 NEU1Q99519 415 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 CITED2Q99967 270 aaPredicted RBP6.01□□□□□ -1.45
VPS39-213ENST00000570062 VGLL1Q99990 258 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 STAB1Q9NY15 2570 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 SVEP1Q4LDE5 3571 aa6.01□□□□□ -1.45
VPS39-213ENST00000570062 MAP1AP78559 2803 aaPredicted RBP6□□□□□ -1.45
VPS39-213ENST00000570062 HIGD1CA8MV81 97 aa6□□□□□ -1.45
VPS39-213ENST00000570062 ZNF705FA8MVS1 300 aaPredicted RBP6□□□□□ -1.45
VPS39-213ENST00000570062 SH2D1AO60880 128 aa6□□□□□ -1.45
VPS39-213ENST00000570062 TRGC2P03986 189 aa6□□□□□ -1.45
VPS39-213ENST00000570062 CSN3P07498 182 aa6□□□□□ -1.45
VPS39-213ENST00000570062 INSL3P51460 131 aa6□□□□□ -1.45
VPS39-213ENST00000570062 SLURP1P55000 103 aa6□□□□□ -1.45
VPS39-213ENST00000570062 DEFB114Q30KQ6 69 aa6□□□□□ -1.45
VPS39-213ENST00000570062 ACTL10Q5JWF8 245 aa6□□□□□ -1.45
VPS39-213ENST00000570062 APRG1Q8IVJ8 170 aa6□□□□□ -1.45
VPS39-213ENST00000570062 NUP35Q8NFH5 326 aa6□□□□□ -1.45
VPS39-213ENST00000570062 RAX2Q96IS3 184 aa6□□□□□ -1.45
VPS39-213ENST00000570062 KCNS1Q96KK3 526 aa6□□□□□ -1.45
VPS39-213ENST00000570062 CLUHP3Q96NS8 147 aa6□□□□□ -1.45
VPS39-213ENST00000570062 FAM110AQ9BQ89 295 aa6□□□□□ -1.45
VPS39-213ENST00000570062 ZNF469Q96JG9 3925 aaPredicted RBP6□□□□□ -1.45
VPS39-213ENST00000570062 HIVEP2P31629 2446 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 A0A1B0GUT8 65 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 SNURFLB1AK76 121 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 PRAC2D3DTV9 90 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 AMBPP02760 352 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 ORM1P02763 201 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 GPX1P07203 203 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 HLA-DMBP28068 263 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 HBBP68871 147 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 IGFL4Q6B9Z1 124 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 FRZBQ92765 325 aa5.99□□□□□ -1.45
VPS39-213ENST00000570062 APCSP02743 223 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 MED14OSP0DP75 135 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 CRIP1P50238 77 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 CACNG7P62955 275 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 FABP9Q0Z7S8 132 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 ERCC8Q13216 396 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 DEFB136Q30KP8 78 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 PSMG4Q5JS54 123 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 LINC00322Q6ZN03 302 aaPredicted RBP5.98□□□□□ -1.45
VPS39-213ENST00000570062 SMIM15Q7Z3B0 74 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 FAM19A4Q96LR4 140 aa5.98□□□□□ -1.45
VPS39-213ENST00000570062 MCRIP2Q9BUT9 160 aaKnown RBP5.98□□□□□ -1.45
VPS39-213ENST00000570062 ANK3Q12955 4377 aaKnown RBP5.98□□□□□ -1.45
VPS39-213ENST00000570062 IGKV3-7A0A075B6H7 116 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 A0A0J9YX75 114 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 A0A1B0GXF2 115 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 PF4P02776 101 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 ZNF688P0C7X2 276 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 TRGC1P0CF51 173 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 TCL1AP56279 114 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 RAB4BP61018 213 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 NUTF2P61970 127 aaKnown RBP5.97□□□□□ -1.45
VPS39-213ENST00000570062 OR10J3Q5JRS4 329 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 COA6Q5JTJ3 125 aaKnown RBP5.97□□□□□ -1.45
VPS39-213ENST00000570062 DNLZQ5SXM8 178 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 TMEM136Q6ZRR5 245 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 FER1L6-AS1Q8NA97 138 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 GATD1Q8NB37 220 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 Q8TAT8 98 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 C20orf173Q96LM9 149 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 C8orf49Q96NF6 230 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 C20orf144Q9BQM9 153 aa5.97□□□□□ -1.45
VPS39-213ENST00000570062 FLNAP21333 2647 aaKnown RBP5.97□□□□□ -1.45
VPS39-213ENST00000570062 ZANQ9Y493 2812 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 A0A1W2PRX2 142 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 C5orf52A6NGY3 159 aa5.96□□□□□ -1.46
VPS39-213ENST00000570062 KLLNB2CW77 178 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms