RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 GNB1LQ9BYB4 327 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 ZNF331Q9NQX6 463 aaPredicted RBP4.54□□□□□ -1.68
VPS39-209ENST00000568029 KLK9Q9UKQ9 250 aa4.54□□□□□ -1.68
VPS39-209ENST00000568029 TRBV19A0A075B6N1 114 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 TRAV34A0A0B4J273 112 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 TRBV6-1A0A0K0K1D8 114 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 SERTM2A0A1B0GWG4 89 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 SMIM27A0A1W2PRY6 76 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 IZUMO1RA6ND01 250 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 PCP4L1A6NKN8 68 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 A8MWL6 223 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 B4DSR2 109 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 M0QZK8 103 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 BMPR1BO00238 502 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 TCRAP04437 139 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 RPL7P18124 248 aaKnown RBP4.53□□□□□ -1.68
VPS39-209ENST00000568029 HILS1P60008 231 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 PSG9Q00887 426 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 PDE6HQ13956 83 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 USF2Q15853 346 aaPredicted RBP4.53□□□□□ -1.68
VPS39-209ENST00000568029 LEMD1Q68G75 181 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 RASL11AQ6T310 242 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 OR8I2Q8N0Y5 310 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 OR10D4PQ8NGN7 298 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 LINC00479Q96M42 142 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 DUX5Q96PT3 197 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 ATP6V0BQ99437 205 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 GPR61Q9BZJ8 451 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 RNASE7Q9H1E1 156 aaKnown RBP4.53□□□□□ -1.68
VPS39-209ENST00000568029 NIT2Q9NQR4 276 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 ZNF586Q9NXT0 402 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 ZNF492Q9P255 531 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 RABAC1Q9UI14 185 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 RPH3ALQ9UNE2 315 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 ZFP30Q9Y2G7 519 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 MOB4Q9Y3A3 225 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 CSMD3Q7Z407 3707 aa4.53□□□□□ -1.68
VPS39-209ENST00000568029 RYR1P21817 5038 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 TRBV7-1A0A0A6YYK4 115 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 OR2T8A6NH00 312 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 FBLL1A6NHQ2 334 aaKnown RBP4.52□□□□□ -1.69
VPS39-209ENST00000568029 ATP6V0E1O15342 81 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 LTAP01374 205 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 P01737 135 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 HLA-DQA1P01909 254 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 MSMBP08118 114 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 CTSGP08311 255 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 SNRPCP09234 159 aaKnown RBP4.52□□□□□ -1.69
VPS39-209ENST00000568029 VPREB1P12018 145 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 FABP4P15090 132 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 IER3P46695 156 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 GNG5P63218 68 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 RHOGP84095 191 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 NDPQ00604 133 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 ATP5G2Q06055 141 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 ECSCRQ19T08 205 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 DNLZQ5SXM8 178 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 PRR27Q6MZM9 219 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 C5orf56Q8N8D9 126 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 OR4B1Q8NGF8 309 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 TSKUQ8WUA8 353 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 EEF1AKMT3Q96AZ1 226 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 ZNF414Q96IQ9 312 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 NAT8BQ9UHF3 227 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 SOX21Q9Y651 276 aaPredicted RBP4.52□□□□□ -1.69
VPS39-209ENST00000568029 S4R3C0 116 aa4.52□□□□□ -1.69
VPS39-209ENST00000568029 TENM3Q9P273 2699 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 IGHV3OR16-10A0A075B7F0 116 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 TRAV41A0A0B4J266 112 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 FAM231BA6NCW3 169 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 FAM223BA6NKX1 122 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 IFITM10A6NMD0 228 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 SNURFLB1AK76 121 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 H3BTX0 84 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 J3QLI3 93 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 ZNF253O75346 499 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 APCSP02743 223 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 IGLC2P0DOY2 106 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 CRISP2P16562 243 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 CBLN1P23435 193 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 CRIP2P52943 208 aaPredicted RBP4.51□□□□□ -1.69
VPS39-209ENST00000568029 RAB4BP61018 213 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 PAFAH1B2P68402 229 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 RELQ04864 619 aaPredicted RBP4.51□□□□□ -1.69
VPS39-209ENST00000568029 C15orf32Q32M92 178 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 PDZD11Q5EBL8 140 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 GFI1BQ5VTD9 330 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 GOLT1AQ6ZVE7 132 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 ATP5L2Q7Z4Y8 100 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 PRNTQ86SH4 94 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 TMEM219Q86XT9 240 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 FAM223AQ8IWN6 122 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 EXOC3-AS1Q8N2X6 119 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 TMEM75Q8N9X5 138 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 NHLRC2Q8NBF2 726 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 ZNF502Q8TBZ5 544 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 PACRGQ96M98 296 aaPredicted RBP4.51□□□□□ -1.69
VPS39-209ENST00000568029 HIST1H2BLQ99880 126 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 HSPB9Q9BQS6 159 aa4.51□□□□□ -1.69
VPS39-209ENST00000568029 RPP21Q9H633 154 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms