RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 LOXL1Q08397 574 aaPredicted RBP4.75□□□□□ -1.65
CLN3-223ENST00000566472 KIR3DS1Q14943 382 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 FAM106AQ4KMX7 169 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 SPANXN1Q5VSR9 72 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 PRSS57Q6UWY2 283 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 C12orf54Q6X4T0 127 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 STPG4Q8N801 248 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 OR8A1Q8NGG7 326 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 OR2K2Q8NGT1 345 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 ORAOV1Q8WV07 137 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 IFI27L1Q96BM0 104 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 C20orf173Q96LM9 149 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 TMEM208Q9BTX3 173 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 RHPN1-AS1Q9BWJ2 59 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 PEF1Q9UBV8 284 aaKnown RBP4.75□□□□□ -1.65
CLN3-223ENST00000566472 SMPXQ9UHP9 88 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 LINC00527Q9UJ94 153 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 LOC400499M0QZD8 3231 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 MUC21A0A0G2JKD1 596 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 MUC21A0A140T8X8 626 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 SIVA1O15304 175 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 NXPH4O95158 308 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 PPP1R17O96001 155 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 IGHV3-11P01762 117 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 PSMB8P28062 276 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 HINT1P49773 126 aaPredicted RBP4.74□□□□□ -1.65
CLN3-223ENST00000566472 BLCAPP62952 87 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 DEFB112Q30KQ8 113 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 MUC21Q5SSG8 566 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 LRRC75A-AS1Q8N1F1 130 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 NRACQ8N912 160 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 KLK15Q9H2R5 256 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 BEX4Q9NWD9 120 aaPredicted RBP4.74□□□□□ -1.65
CLN3-223ENST00000566472 MSRB1Q9NZV6 116 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 DMXL1Q9Y485 3027 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 CELSR3Q9NYQ7 3312 aa4.74□□□□□ -1.65
CLN3-223ENST00000566472 ARHGAP32A7KAX9 2087 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 LINC01549A6NIU2 74 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 KLLNB2CW77 178 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 H0Y8G0 127 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 LGALS9O00182 355 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 AVPP01185 164 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 ELANEP08246 267 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 HLA-DRB4P13762 266 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 G0S2P27469 103 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 LEPP41159 167 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 BVES-AS1Q5T3Y7 98 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 PRR9Q5T870 116 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 POM121L12Q8N7R1 296 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 OR9G4Q8NGQ1 327 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 MYOZ3Q8TDC0 251 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 C20orf78Q9BR46 151 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 DPH3P1Q9H4G8 78 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 VPREB3Q9UKI3 123 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 TIMM8BQ9Y5J9 83 aaPredicted RBP4.73□□□□□ -1.65
CLN3-223ENST00000566472 COX11Q9Y6N1 276 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 HLA-DRB4X5D2U9 266 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 SPTA1P02549 2419 aa4.73□□□□□ -1.65
CLN3-223ENST00000566472 MGAQ8IWI9 3026 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 IGF2RP11717 2491 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 H3BVH4 76 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 IGHV4-59P01825 116 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 LGALS1P09382 135 aaKnown RBP4.72□□□□□ -1.65
CLN3-223ENST00000566472 FGF6P10767 208 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 EVI2AP22794 236 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 S100A4P26447 101 aaKnown RBP4.72□□□□□ -1.65
CLN3-223ENST00000566472 RPL32P62910 135 aaKnown RBP4.72□□□□□ -1.65
CLN3-223ENST00000566472 SEC11AP67812 179 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 LAGE3Q14657 143 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 ORMDL2Q53FV1 153 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 TM4SF20Q53R12 229 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 Q6ZS46 218 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 BOD1L2Q8IYS8 172 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 TEX29Q8N6K0 151 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 RNF152Q8N8N0 203 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 DCANP1Q8TF63 244 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 AP1S3Q96PC3 154 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 SMIM2Q9BVW6 85 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 ZMAT4Q9H898 229 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 ABCA4P78363 2273 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 CEP295Q9C0D2 2601 aa4.72□□□□□ -1.65
CLN3-223ENST00000566472 SPTBN2O15020 2390 aa4.71□□□□□ -1.65
CLN3-223ENST00000566472 TRAV12-1A0A0B4J245 112 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 CD5LO43866 347 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 DUSP14O95147 198 aaKnown RBP4.71□□□□□ -1.66
CLN3-223ENST00000566472 NUDT3O95989 172 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 IGHV4-31P0DP07 118 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 TFPI2P48307 235 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 RPL11P62913 178 aaKnown RBP4.71□□□□□ -1.66
CLN3-223ENST00000566472 SRSF1Q07955 248 aaKnown RBP eCLIP4.71□□□□□ -1.66
CLN3-223ENST00000566472 HSD52Q0P140 79 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 ODF1Q14990 250 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 ANXA2RQ3ZCQ2 193 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 ANKRD39Q53RE8 183 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 MPV17L2Q567V2 206 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 Q6YL49 198 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 C2orf91Q6ZV80 131 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 TMEM158Q8WZ71 300 aa4.71□□□□□ -1.66
CLN3-223ENST00000566472 MCRIP2Q9BUT9 160 aaKnown RBP4.71□□□□□ -1.66
CLN3-223ENST00000566472 PHLDA3Q9Y5J5 127 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms