RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 A0A087WWC5 75 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 TRAV4A0A0B4J268 109 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 ZFP92A6NM28 416 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 SNRPGP15A8MWD9 76 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 GABARAPH6UMI1 98 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 GABARAPO95166 117 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 IFNA7P01567 189 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 HLA-DQA1P01909 254 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 SLC25A5P05141 298 aaKnown RBP2.99□□□□□ -1.93
VPS35-204ENST00000563884 FCGR2CP31995 323 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 FXYD4P59646 89 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 POLR2GP62487 172 aaKnown RBP eCLIP2.99□□□□□ -1.93
VPS35-204ENST00000563884 RPS25P62851 125 aaKnown RBP2.99□□□□□ -1.93
VPS35-204ENST00000563884 RHOHQ15669 191 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 DHRS11Q6UWP2 260 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 COX8CQ7Z4L0 72 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 S100A7AQ86SG5 101 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 DIRC1Q969H9 104 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 IL22RA2Q969J5 263 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 UBE2WQ96B02 151 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 RPUSD4Q96CM3 377 aaKnown RBP2.99□□□□□ -1.93
VPS35-204ENST00000563884 ACY3Q96HD9 319 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 CHCHD7Q9BUK0 85 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 RNF24Q9Y225 148 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 RRP15Q9Y3B9 282 aaKnown RBP2.99□□□□□ -1.93
VPS35-204ENST00000563884 KLF12Q9Y4X4 402 aa2.99□□□□□ -1.93
VPS35-204ENST00000563884 TRAV8-2A0A0B4J237 113 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 C7orf71A4D174 169 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 HMGB1P1B2RPK0 211 aaPredicted RBP2.98□□□□□ -1.93
VPS35-204ENST00000563884 MPDU1O75352 247 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 SFTA3P0C7M3 94 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 RPL7P18124 248 aaKnown RBP2.98□□□□□ -1.93
VPS35-204ENST00000563884 SRPXP78539 464 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 BSXQ3C1V8 233 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 SPINK9Q5DT21 86 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 TMEM17Q86X19 198 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 TMEM75Q8N9X5 138 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 OR4C5Q8NGB2 326 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 OR10P1Q8NGE3 313 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 FAM3DQ96BQ1 224 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 CCDC124Q96CT7 223 aaKnown RBP2.98□□□□□ -1.93
VPS35-204ENST00000563884 SEC22AQ96IW7 307 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 LINC00474Q9P2X8 69 aa2.98□□□□□ -1.93
VPS35-204ENST00000563884 TRAV18A0A075B6X5 111 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 A0A087WX48 190 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 IGHV3-16A0A0C4DH30 117 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 CASQ2O14958 399 aaPredicted RBP2.97□□□□□ -1.93
VPS35-204ENST00000563884 SCGNO76038 276 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 TCRBP04435 133 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 CXCL2P19875 107 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 CXCL3P19876 107 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 ETV1P50549 477 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 GNG2P59768 71 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 MAJINQ3KP22 176 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 C2orf83Q53S99 150 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 NIT1Q86X76 327 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 FAM219AQ8IW50 185 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 LGI3Q8N145 548 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 INO80EQ8NBZ0 244 aaPredicted RBP2.97□□□□□ -1.93
VPS35-204ENST00000563884 CCDC197Q8NCU1 140 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 LYPD6BQ8NI32 183 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 OCC1Q8TAD7 63 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 SLC35E1Q96K37 410 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 SLC50A1Q9BRV3 221 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 SPXQ9BT56 116 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 TMEM147Q9BVK8 224 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 TMEM222Q9H0R3 208 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 LINC00846Q9NV44 126 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 ARGLU1Q9NWB6 273 aaPredicted RBP2.97□□□□□ -1.93
VPS35-204ENST00000563884 KLK12Q9UKR0 248 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 NEBP20929 6669 aa2.97□□□□□ -1.93
VPS35-204ENST00000563884 USH2AO75445 5202 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 LOC100131303A0A0U1RQF7 123 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 MEIS3P1A6NDR6 274 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 GPR31O00270 319 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 PGLYRP1O75594 196 aaPredicted RBP2.96□□□□□ -1.94
VPS35-204ENST00000563884 PSMA1P25786 263 aaKnown RBP2.96□□□□□ -1.94
VPS35-204ENST00000563884 POLR2IP36954 125 aaKnown RBP2.96□□□□□ -1.94
VPS35-204ENST00000563884 AKR1C2P52895 323 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 C2orf76Q3KRA6 126 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 LBHQ53QV2 105 aaPredicted RBP2.96□□□□□ -1.94
VPS35-204ENST00000563884 GPR107Q5VW38 600 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 LCN15Q6UWW0 184 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 SPATA24Q86W54 205 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 BEST4Q8NFU0 473 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 ALKBH7Q9BT30 221 aaPredicted RBP2.96□□□□□ -1.94
VPS35-204ENST00000563884 AMBNQ9NP70 447 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 CACFD1Q9UGQ2 172 aa2.96□□□□□ -1.94
VPS35-204ENST00000563884 DIMT1Q9UNQ2 313 aaKnown RBP2.96□□□□□ -1.94
VPS35-204ENST00000563884 FCGBPQ9Y6R7 5405 aaPredicted RBP2.96□□□□□ -1.94
VPS35-204ENST00000563884 A0A087X0K7 114 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 FBLL1A6NHQ2 334 aaKnown RBP2.95□□□□□ -1.94
VPS35-204ENST00000563884 RPL37AP8A6NKH3 93 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 MYL12BO14950 172 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 ARL6IP5O75915 188 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 HLA-DMAP28067 261 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 ZNF138P52744 262 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 TAS2R20P59543 309 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 SPCS3P61009 180 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 ZNF90Q03938 601 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms