RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 DPH3P1Q9H4G8 78 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 PDFQ9HBH1 243 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 DAZ1Q9NQZ3 744 aaKnown RBP2.5□□□□□ -2.01
VPS35-203ENST00000562420 CALYQ9NYX4 217 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 TP73-AS1Q9UF72 201 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 PKIGQ9Y2B9 76 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 Q9Y3F1 56 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 AMMECR1Q9Y4X0 333 aaPredicted RBP2.5□□□□□ -2.01
VPS35-203ENST00000562420 SCN2AQ99250 2005 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 SRCAPQ6ZRS2 3230 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 PLXNA4Q9HCM2 1894 aa2.5□□□□□ -2.01
VPS35-203ENST00000562420 PIKFYVEQ9Y2I7 2098 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 DOCK6Q96HP0 2047 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 LOC285556D6RIA3 1793 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 TRBV25-1A0A075B6N4 114 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 IGHV3OR16-9A0A0B4J2B5 98 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 TRBV10-2A0A0K0K1G8 114 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 FAM236AA0A1B0GUQ0 79 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 FAM236BA0A1B0GV22 79 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 A0A1B0GW54 56 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 A0A1B0GXF2 115 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 RBAKDNA6NC62 111 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 K7EM74 188 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 SYNGR2O43760 224 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 SLC25A20O43772 301 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 NDUFS5O43920 106 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 DNAH10OSP0CZ25 163 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 NPPCP23582 126 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 FKBP2P26885 142 aaKnown RBP2.49□□□□□ -2.01
VPS35-203ENST00000562420 SAA4P35542 130 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 UBE2D1P51668 147 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 DSCR4P56555 118 aaPredicted RBP2.49□□□□□ -2.01
VPS35-203ENST00000562420 PCBD1P61457 104 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 HBBP68871 147 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 C17orf58Q2M2W7 97 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 CLEC19AQ6UXS0 136 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 LYZL2Q7Z4W2 148 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 NDUFA11Q86Y39 141 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 PIANPQ8IYJ0 282 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 DEFB106AQ8N104 65 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 EXOC3-AS1Q8N2X6 119 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 LINC00311Q8N616 119 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 DCAF4L2Q8NA75 395 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 ZNRF1Q8ND25 227 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 RFESDQ8TAC1 157 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 VSIG2Q96IQ7 327 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 METTL26Q96S19 204 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 GLIPR2Q9H4G4 154 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 NXT2Q9NPJ8 142 aaKnown RBP2.49□□□□□ -2.01
VPS35-203ENST00000562420 ESM1Q9NQ30 184 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 NHP2Q9NX24 153 aaKnown RBP2.49□□□□□ -2.01
VPS35-203ENST00000562420 TAS2R4Q9NYW5 299 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 COL4A5P29400 1685 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 ZNF236Q9UL36 1845 aa2.49□□□□□ -2.01
VPS35-203ENST00000562420 PLXNA3P51805 1871 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 KIAA1671Q9BY89 1806 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 IGKV6D-21A0A0A0MT36 114 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 A0A0B4J2C4 111 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 A0A1B0GWA3 101 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 PLAC8L1A1L4L8 177 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 PGPA6NDG6 321 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 LINC01546A6NGU7 62 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 NCBP2LA6PVI3 153 aaKnown RBP2.48□□□□□ -2.01
VPS35-203ENST00000562420 K7EMI3 77 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 K7EQS6 105 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 CCL16O15467 120 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 EFNA2O43921 213 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 COX6CP09669 75 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 IL9P15248 144 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 PLNP26678 52 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 RPL18Q07020 188 aaKnown RBP2.48□□□□□ -2.01
VPS35-203ENST00000562420 ATXN8Q156A1 80 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 TMEM52BQ4KMG9 183 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 CENPWQ5EE01 88 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 LINC01590Q5TEZ4 76 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 FAM104BQ5XKR9 115 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 ZNF493Q6ZR52 646 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 LINC00305Q7Z4B0 112 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 DAND5Q8N907 189 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 LY6G5BQ8NDX9 201 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 OR8A1Q8NGG7 326 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 ZNF414Q96IQ9 312 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 Q96M85 177 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 CXCL16Q9H2A7 254 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 OTORQ9NRC9 128 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 EPDR1Q9UM22 224 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 KIF25-AS1Q9Y6Z4 181 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 THSD7BQ9C0I4 1608 aa2.48□□□□□ -2.01
VPS35-203ENST00000562420 CASP8AP2Q9UKL3 1982 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 ADAMTSL1Q8N6G6 1762 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.47□□□□□ -2.01
VPS35-203ENST00000562420 IGKV6-21A0A0C4DH24 114 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 TRBV30A0A0K0K1B3 111 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 TRBV10-3A0A0K0K1G6 114 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 H3BMM0 161 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 J3QT63 122 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 K7EMT4 169 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 LGALS3P17931 250 aaKnown RBP2.47□□□□□ -2.01
VPS35-203ENST00000562420 CCL1P22362 96 aa2.47□□□□□ -2.01
VPS35-203ENST00000562420 UBE2E1P51965 193 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms