RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ARMS2P0C7Q2 107 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 EVI2AP22794 236 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 DAD1P61803 113 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 DEFB135Q30KP9 77 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 GFI1BQ5VTD9 330 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 MAP1LC3AQ9H492 121 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 GGTLC3B5MD39 225 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 H7C1H1 209 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 G0S2P27469 103 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 CDKN1BP46527 198 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 COX19Q49B96 90 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 C8orf49Q96NF6 230 aa7.13□□□□□ -1.27
VPS39-205ENST00000562258 BUB3O43684 328 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 SH2D1AO60880 128 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 HLA-DQA1P01909 254 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 RNASE1P07998 156 aaKnown RBP7.12□□□□□ -1.27
VPS39-205ENST00000562258 APOC4P55056 127 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PRR20EP86478 221 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PRR20CP86479 221 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PRR20DP86480 221 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PRR20BP86481 221 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PRR20AP86496 221 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 FAM90A2PQ658T7 463 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 SPAG8Q99932 426 aaPredicted RBP7.12□□□□□ -1.27
VPS39-205ENST00000562258 SLC25A2Q9BXI2 301 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 A0A087WX48 190 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PDE6HQ13956 83 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 THAP8Q8NA92 274 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 LYL1P12980 280 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 C19orf54Q5BKX5 351 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 SHISA2Q6UWI4 295 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 DEFB125Q8N687 156 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 CCDC140Q96MF4 163 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 SMAD5-AS1Q9Y6J3 95 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 IGKV3D-20A0A0C4DH25 116 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 NCR2O95944 276 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 IGF1P05019 195 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 ZNF726P1Q15940 193 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PATE2Q6UY27 113 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 PHLDA1Q8WV24 401 aaPredicted RBP7.12□□□□□ -1.27
VPS39-205ENST00000562258 PRELID3AQ96N28 172 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 ZNF702PQ9H963 129 aa7.12□□□□□ -1.27
VPS39-205ENST00000562258 LYZL1Q6UWQ5 148 aa7.11□□□□□ -1.27
VPS39-205ENST00000562258 LYPD1Q8N2G4 141 aa7.11□□□□□ -1.27
VPS39-205ENST00000562258 WIPF2Q8TF74 440 aaPredicted RBP7.11□□□□□ -1.27
VPS39-205ENST00000562258 FBLL1A6NHQ2 334 aaKnown RBP7.11□□□□□ -1.27
VPS39-205ENST00000562258 DIRC3C9JPN6 131 aa7.11□□□□□ -1.27
VPS39-205ENST00000562258 LINC00482Q8N8I6 264 aa7.11□□□□□ -1.27
VPS39-205ENST00000562258 ZNF414Q96IQ9 312 aa7.11□□□□□ -1.27
VPS39-205ENST00000562258 AGPAT4-IT1Q9H0P7 198 aa7.11□□□□□ -1.27
VPS39-205ENST00000562258 IL36BQ9NZH7 164 aa7.11□□□□□ -1.27
VPS39-205ENST00000562258 EBI3Q14213 229 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 GPHB5Q86YW7 130 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 C4orf3Q8WVX3 66 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 FXYD5Q96DB9 178 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 PACRGQ96M98 296 aaPredicted RBP7.1□□□□□ -1.27
VPS39-205ENST00000562258 GSN-AS1Q9NRJ2 163 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 LSM4Q9Y4Z0 139 aaKnown RBP7.1□□□□□ -1.27
VPS39-205ENST00000562258 MT-ND6P03923 174 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 LINC01551Q86U37 167 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 TOMM7Q9P0U1 55 aa7.1□□□□□ -1.27
VPS39-205ENST00000562258 A0A0J9YY99 117 aa7.09□□□□□ -1.27
VPS39-205ENST00000562258 ANXA2RQ3ZCQ2 193 aa7.09□□□□□ -1.27
VPS39-205ENST00000562258 TMEM170AQ8WVE7 144 aa7.09□□□□□ -1.27
VPS39-205ENST00000562258 SUMO2P61956 95 aaKnown RBP7.09□□□□□ -1.27
VPS39-205ENST00000562258 Q86TA4 180 aa7.09□□□□□ -1.27
VPS39-205ENST00000562258 TRAV1-1A0A0B4J248 108 aa7.09□□□□□ -1.27
VPS39-205ENST00000562258 OR10J3Q5JRS4 329 aa7.09□□□□□ -1.27
VPS39-205ENST00000562258 NOP10Q9NPE3 64 aaKnown RBP7.09□□□□□ -1.27
VPS39-205ENST00000562258 LOC105371267A0A1B0GV96 52 aa7.09□□□□□ -1.28
VPS39-205ENST00000562258 C7orf71A4D174 169 aa7.09□□□□□ -1.28
VPS39-205ENST00000562258 PRAC2D3DTV9 90 aa7.09□□□□□ -1.28
VPS39-205ENST00000562258 ZNF324O75467 553 aaPredicted RBP7.09□□□□□ -1.28
VPS39-205ENST00000562258 NDUFA11Q86Y39 141 aa7.09□□□□□ -1.28
VPS39-205ENST00000562258 ATP6V0BQ99437 205 aa7.09□□□□□ -1.28
VPS39-205ENST00000562258 AP5S1Q9NUS5 200 aa7.09□□□□□ -1.28
VPS39-205ENST00000562258 IGHV1OR15-1A0A075B7D0 117 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 LOC102724200A0A096LPH7 203 aaPredicted RBP7.08□□□□□ -1.28
VPS39-205ENST00000562258 ZNF124Q15973 351 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 GEMIN7Q9H840 131 aaKnown RBP7.08□□□□□ -1.28
VPS39-205ENST00000562258 OSTCQ9NRP0 149 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 MRPL16Q9NX20 251 aaKnown RBP7.08□□□□□ -1.28
VPS39-205ENST00000562258 GAGE12JA6NER3 117 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 GAGE1Q13065 139 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 GAGE4Q13068 117 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 GAGE5Q13069 117 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 GAGE13Q4V321 117 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 SCGB1D4Q6XE38 83 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 ZNF114Q8NC26 417 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 CSTL1Q9H114 145 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 C9JQL5 133 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 GNRH2O43555 120 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 ORMDL3Q8N138 153 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 PRADC1Q9BSG0 188 aa7.08□□□□□ -1.28
VPS39-205ENST00000562258 C21orf62-AS1Q17RA5 79 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 MAP1LC3CQ9BXW4 147 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 A0A1B0GW64 132 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 SMKR1H3BMG3 65 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 AZU1P20160 251 aa7.07□□□□□ -1.28
VPS39-205ENST00000562258 RPL36AP83881 106 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms