RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 S100A4P26447 101 aaKnown RBP5.7□□□□□ -1.5
VPS39-204ENST00000561818 SYNJ2BPP57105 145 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 PMCHL1Q16048 86 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 KHDC1LQ5JSQ8 128 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 PIK3CD-AS1Q5SR53 167 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 LINC00322Q6ZN03 302 aaPredicted RBP5.7□□□□□ -1.5
VPS39-204ENST00000561818 Q6ZSV7 163 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 SYT8Q8NBV8 401 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 KLHL30-AS1Q8NEE0 82 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 FAM19A4Q96LR4 140 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 SGK494Q96LW2 274 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 ALKBH7Q9BT30 221 aaPredicted RBP5.7□□□□□ -1.5
VPS39-204ENST00000561818 GPR61Q9BZJ8 451 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 MS4A6AQ9H2W1 248 aa5.7□□□□□ -1.5
VPS39-204ENST00000561818 HELZ2Q9BYK8 2649 aaKnown RBP5.7□□□□□ -1.5
VPS39-204ENST00000561818 UTP20O75691 2785 aaKnown RBP5.7□□□□□ -1.5
VPS39-204ENST00000561818 CENPEQ02224 2701 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 IGHV4OR15-8A0A075B7B6 117 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 IGHV3OR16-8A0A075B7F1 116 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 A0A087WW49 117 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 IGHV3-66A0A0C4DH42 116 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 KLLNB2CW77 178 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 TCAPO15273 167 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 TCF21O43680 179 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 SERF1AO75920 110 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 CDKN1BP46527 198 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 AMTP48728 403 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 CRIP1P50238 77 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 NUTF2P61970 127 aaKnown RBP5.69□□□□□ -1.5
VPS39-204ENST00000561818 SLAQ13239 276 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 FHL3Q13643 280 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 TWIST1Q15672 202 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 TMEM95Q3KNT9 176 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 TDRG1Q3Y452 100 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 TCTEX1D4Q5JR98 221 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 FAM104BQ5XKR9 115 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 FAM159AQ6UWV7 190 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 Q6ZS46 218 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 RNF182Q8N6D2 247 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 OR11H1Q8NG94 326 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 Q8TAT8 98 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 C18orf32Q8TCD1 76 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 MRAP2Q96G30 205 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 C8orf49Q96NF6 230 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 AP1S3Q96PC3 154 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 TPPP3Q9BW30 176 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 SSBP4Q9BWG4 385 aaPredicted RBP5.69□□□□□ -1.5
VPS39-204ENST00000561818 NXT2Q9NPJ8 142 aaKnown RBP5.69□□□□□ -1.5
VPS39-204ENST00000561818 NIT2Q9NQR4 276 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 AP5S1Q9NUS5 200 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 RNF114Q9Y508 228 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 UNC79Q9P2D8 2635 aa5.69□□□□□ -1.5
VPS39-204ENST00000561818 FBN2P35556 2912 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 TRGV11A0A075B6L2 103 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 IGHV3-49A0A0A0MS15 119 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 A0A0J9YX75 114 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 ZNF705FA8MVS1 300 aaPredicted RBP5.68□□□□□ -1.5
VPS39-204ENST00000561818 SPINK4O60575 86 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 ARMS2P0C7Q2 107 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 KRTAP1-1Q07627 177 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 SPANXN1Q5VSR9 72 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 LYZL1Q6UWQ5 148 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 FA2HQ7L5A8 372 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 DEFB125Q8N687 156 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 ZFAND2AQ8N6M9 145 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 MAP1LC3AQ9H492 121 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 U3KQK5 164 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 POLQO75417 2590 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 CRYBG3Q68DQ2 2970 aa5.68□□□□□ -1.5
VPS39-204ENST00000561818 ASH1LQ9NR48 2969 aaKnown RBP5.68□□□□□ -1.5
VPS39-204ENST00000561818 IGHV3OR16-13A0A075B7E8 117 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 IGHV3-74A0A0B4J1X5 117 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 C7orf71A4D174 169 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 GRIFINA4D1Z8 144 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 A8MTW9 85 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 M0R381 172 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 LINC00614P0C842 121 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 SMIM17P0DL12 118 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 CKS2P33552 79 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 INSL3P51460 131 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 PKIAP61925 76 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 ERCC8Q13216 396 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 LCE2CQ5TA81 110 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 LCNL1Q6ZST4 164 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 NDUFA11Q86Y39 141 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 TMEM256Q8N2U0 113 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 OR10AG1Q8NH19 301 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 PRSS3P2Q8NHM4 247 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 DUX5Q96PT3 197 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 NAGKQ9UJ70 344 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 PHLDA3Q9Y5J5 127 aa5.67□□□□□ -1.5
VPS39-204ENST00000561818 ITPR3Q14573 2671 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 CELSR2Q9HCU4 2923 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 CCDC168Q8NDH2 2452 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 PRAC2D3DTV9 90 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 M0R2Z0 102 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 CCL24O00175 119 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 HLA-DRB4P13762 266 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 NTF3P20783 257 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 PDZD11Q5EBL8 140 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms