RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SIGLEC8Q9NYZ4 499 aa8.46□□□□□ -1.06
USP3-218ENST00000560202 TRBV20OR9-2A0A075B6H5 130 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 TRAV34A0A0B4J273 112 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 PF4P02776 101 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 MT-ND6P03923 174 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 DEFB114Q30KQ6 69 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 SAMD13Q5VXD3 122 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 GOLT1AQ6ZVE7 132 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 LINC01551Q86U37 167 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 WFDC3Q8IUB2 231 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 DCANP1Q8TF63 244 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 MRPL53Q96EL3 112 aaKnown RBP8.45□□□□□ -1.06
USP3-218ENST00000560202 MS4A6AQ9H2W1 248 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 KLF12Q9Y4X4 402 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 LY96Q9Y6Y9 160 aa8.45□□□□□ -1.06
USP3-218ENST00000560202 C9JCJ5 164 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 K7EQM0 130 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 ISLRO14498 428 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 PRB4P10163 310 aaPredicted RBP8.44□□□□□ -1.06
USP3-218ENST00000560202 CRISP2P16562 243 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 UBE2G1P62253 170 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 RBX1P62877 108 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 PSG3Q16557 428 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 LINC00482Q8N8I6 264 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 MRPS16Q9Y3D3 137 aaKnown RBP8.44□□□□□ -1.06
USP3-218ENST00000560202 TENM1Q9UKZ4 2725 aa8.44□□□□□ -1.06
USP3-218ENST00000560202 FBN1P35555 2871 aaKnown RBP8.44□□□□□ -1.06
USP3-218ENST00000560202 SERTM2A0A1B0GWG4 89 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 PPBPP02775 128 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 ID1P41134 155 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 TFPI2P48307 235 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 GNG4P50150 75 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 PTTG1IPP53801 180 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 UBE2V1Q13404 147 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 CENPWQ5EE01 88 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 RBPMS2Q6ZRY4 209 aaKnown RBP8.43□□□□□ -1.06
USP3-218ENST00000560202 Q6ZWC4 215 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 SMIM15Q7Z3B0 74 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 TMEM256Q8N2U0 113 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 FMC1Q96HJ9 113 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 C20orf173Q96LM9 149 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 SGK494Q96LW2 274 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 IGF2BP2-AS1Q96M15 143 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 ZNF747Q9BV97 191 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 ATRQ13535 2644 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 IGKV2-40A0A087WW87 121 aaPredicted RBP8.43□□□□□ -1.06
USP3-218ENST00000560202 TRAV8-1A0A0A6YYK1 113 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 PGPEP1LA6NFU8 196 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 PRAC2D3DTV9 90 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 K7EQG2 157 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 IGKV2D-40P01614 121 aaPredicted RBP8.43□□□□□ -1.06
USP3-218ENST00000560202 IGLV2-11P01706 119 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 CD300EQ496F6 205 aaPredicted RBP8.43□□□□□ -1.06
USP3-218ENST00000560202 OR10J3Q5JRS4 329 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 WDR73Q6P4I2 378 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 TMEM61Q8N0U2 210 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 TMEM75Q8N9X5 138 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 ZNF738Q8NE65 137 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 OCC1Q8TAD7 63 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 TMEM158Q8WZ71 300 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 SFRP2Q96HF1 295 aa8.43□□□□□ -1.06
USP3-218ENST00000560202 TRBV6-1A0A0K0K1D8 114 aa8.42□□□□□ -1.06
USP3-218ENST00000560202 SAP30O75446 220 aa8.42□□□□□ -1.06
USP3-218ENST00000560202 CTRLP40313 264 aa8.42□□□□□ -1.06
USP3-218ENST00000560202 PMCHL1Q16048 86 aa8.42□□□□□ -1.06
USP3-218ENST00000560202 PET117Q6UWS5 81 aa8.42□□□□□ -1.06
USP3-218ENST00000560202 BAGE2Q86Y30 109 aa8.42□□□□□ -1.06
USP3-218ENST00000560202 PSG8Q9UQ74 426 aa8.42□□□□□ -1.06
USP3-218ENST00000560202 TRAV2A0A0B4J234 112 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 TRAV25A0A0B4J276 109 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 LTAP01374 205 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 IGLV2-8P01709 118 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 HNRNPA3P51991 378 aaKnown RBP8.41□□□□□ -1.06
USP3-218ENST00000560202 C12orf54Q6X4T0 127 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 PRNTQ86SH4 94 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 Q86TA4 180 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 C3orf56Q8N813 242 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 GNB1LQ9BYB4 327 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 SAMD10Q9BYL1 202 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 IL36BQ9NZH7 164 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 LAMTOR2Q9Y2Q5 125 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 PAM16Q9Y3D7 125 aa8.41□□□□□ -1.06
USP3-218ENST00000560202 RBAKDNA6NC62 111 aa8.4□□□□□ -1.06
USP3-218ENST00000560202 FBLL1A6NHQ2 334 aaKnown RBP8.4□□□□□ -1.06
USP3-218ENST00000560202 ZNF688P0C7X2 276 aa8.4□□□□□ -1.06
USP3-218ENST00000560202 SNRPD3P62318 126 aaKnown RBP8.4□□□□□ -1.06
USP3-218ENST00000560202 BAGE3Q86Y29 109 aa8.4□□□□□ -1.06
USP3-218ENST00000560202 NHLRC2Q8NBF2 726 aa8.4□□□□□ -1.06
USP3-218ENST00000560202 OR10G8Q8NGN5 311 aa8.4□□□□□ -1.06
USP3-218ENST00000560202 SPAG8Q99932 426 aaPredicted RBP8.4□□□□□ -1.06
USP3-218ENST00000560202 VGLL1Q99990 258 aa8.4□□□□□ -1.06
USP3-218ENST00000560202 IZUMO1RA6ND01 250 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 K7EN84 100 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 SERF1AO75920 110 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 IGLV1-51P01701 117 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 GPX1P07203 203 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 IGLC3P0DOY3 106 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 ERCC8Q13216 396 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 PSMG4Q5JS54 123 aa8.4□□□□□ -1.07
USP3-218ENST00000560202 SHISA2Q6UWI4 295 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms