RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ETDBQ3ZM63 59 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 KLF17Q5JT82 389 aaPredicted RBP1.87□□□□□ -2.11
VPS13C-208ENST00000559119 SPANXN5Q5MJ07 72 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 IBA57Q5T440 356 aaKnown RBP1.87□□□□□ -2.11
VPS13C-208ENST00000559119 LINC00596Q86U02 117 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 OSR2Q8N2R0 312 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 WDR31Q8NA23 367 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 NUP35Q8NFH5 326 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 PPDPFLQ8WWR9 84 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 NAT6Q93015 286 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 IGF2BP2-AS1Q96M15 143 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 PRELID3AQ96N28 172 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 SPACA5Q96QH8 159 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 SLC25A2Q9BXI2 301 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 MAP1LC3AQ9H492 121 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 CCL28Q9NRJ3 127 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 TMEM167BQ9NRX6 74 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 CSDC2Q9Y534 153 aaKnown RBP1.87□□□□□ -2.11
VPS13C-208ENST00000559119 INSIG2Q9Y5U4 225 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 MPC1Q9Y5U8 109 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 ATG2AQ2TAZ0 1938 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 TICRRQ7Z2Z1 1910 aa1.87□□□□□ -2.11
VPS13C-208ENST00000559119 CPAMD8Q8IZJ3 1885 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 IGLV11-55A0A075B6I3 123 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1D-43A0A0B4J1Z2 117 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1D-13A0A0B4J2D9 117 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 TCRBV4S1A1TA0A5B7 111 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 H3BP45 60 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 SLC31A1O15431 190 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 APOMO95445 188 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 CLPSP04118 112 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 SLC25A5P05141 298 aaKnown RBP1.86□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF688P0C7X2 276 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 ARL14EPLP0DKL9 152 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-13P0DP09 117 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 IAPPP10997 89 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 FKBP2P26885 142 aaKnown RBP1.86□□□□□ -2.11
VPS13C-208ENST00000559119 CD52P31358 61 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 CSN1S1P47710 185 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 FOXA3P55318 350 aaPredicted RBP1.86□□□□□ -2.11
VPS13C-208ENST00000559119 RBM11P57052 281 aaKnown RBP1.86□□□□□ -2.11
VPS13C-208ENST00000559119 RPL30P62888 115 aaKnown RBP1.86□□□□□ -2.11
VPS13C-208ENST00000559119 HBBP68871 147 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 TFF3Q07654 80 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 CATR1Q13166 79 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 RRN3P1Q2M238 152 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 DEFB134Q4QY38 66 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 CENPWQ5EE01 88 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 GDF5OSQ5U4N7 250 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 LYRM7Q5U5X0 104 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 CFAP126Q5VTH2 177 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 DGAT2L6Q6ZPD8 337 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 SSX8Q7RTT4 187 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 RPRMLQ8N4K4 120 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 OR10J6PQ8NGY7 276 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 ZNRF2Q8NHG8 242 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 ARPC1AQ92747 370 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 FAM131CQ96AQ9 280 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 C20orf78Q9BR46 151 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 CHRNA10Q9GZZ6 450 aa1.86□□□□□ -2.11
VPS13C-208ENST00000559119 COL27A1Q8IZC6 1860 aaPredicted RBP1.86□□□□□ -2.11
VPS13C-208ENST00000559119 VWA8A3KMH1 1905 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 EML5Q05BV3 1969 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 TRBV20-1A0A075B6N2 111 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-27A0A075B6S5 117 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-6A0A0C4DH72 117 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1-12A0A0C4DH73 117 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF816-ZNF321PA0A0X1KG74 233 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 LINC01546A6NGU7 62 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 A8MWL6 223 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 GGTLC3B5MD39 225 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 CCDC179H3BU77 68 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 CCL21O00585 134 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 IGKV1D-12P01611 117 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 ATP5G1P05496 136 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 SCTP09683 121 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 C8orf88P0DMB2 117 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 PRTN3P24158 256 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 CFHR2P36980 270 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 INSL3P51460 131 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 TNFAIP6P98066 277 aaPredicted RBP1.85□□□□□ -2.11
VPS13C-208ENST00000559119 DIAPH2-AS1Q14236 149 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 C12orf74Q32Q52 190 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 TTC32Q5I0X7 151 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 C10orf128Q5T292 105 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 SLC25A48Q6ZT89 311 aaKnown RBP1.85□□□□□ -2.11
VPS13C-208ENST00000559119 LINC00173Q6ZV60 143 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 TEN1Q86WV5 123 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 OR11H6Q8NGC7 330 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 OR51H1Q8NH63 302 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 OR13C6PQ8NH95 151 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 MYOZ3Q8TDC0 251 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 RAB37Q96AX2 223 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 BORCS8Q96FH0 119 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 ZC2HC1AQ96GY0 325 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 CARD19Q96LW7 228 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 C18orf15Q96N68 181 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 LINC01587Q99440 93 aa1.85□□□□□ -2.11
VPS13C-208ENST00000559119 RNASE7Q9H1E1 156 aaKnown RBP1.85□□□□□ -2.11
VPS13C-208ENST00000559119 ZNF442Q9H7R0 627 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms