RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SMIM15Q7Z3B0 74 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 TMEM219Q86XT9 240 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 AMN1Q8IY45 258 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 PMCHL2Q9BQD1 86 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 VCX2Q9H322 139 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 MAP1LC3AQ9H492 121 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 PEMTQ9UBM1 199 aa5.59□□□□□ -1.51
VPS13C-206ENST00000558338 DCHS1Q96JQ0 3298 aa5.59□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV3OR16-8A0A075B7F1 116 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 A6NDX4 124 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 IGHG2P01859 326 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 HBDP02042 147 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 MSMBP08118 114 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 CDKN1BP46527 198 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 ATP5J2P56134 94 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 PRR31Q5SQ13 230 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 DPF1Q92782 380 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 ZNF747Q9BV97 191 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 SIGLEC8Q9NYZ4 499 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 ZNF580Q9UK33 172 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 IGF2RP11717 2491 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 TRAV8-2A0A0B4J237 113 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 A0A0G2JLM5 398 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 LINC01548A6NM66 108 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 OVOL1O14753 267 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 TCF21O43680 179 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 ZNF25P17030 456 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-206ENST00000558338 IFI27P40305 119 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-206ENST00000558338 PTTG1IPP53801 180 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 CACNG7P62955 275 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 ERCC8Q13216 396 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 COTL1Q14019 142 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 LGALS9BQ3B8N2 356 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 PSMG4Q5JS54 123 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 SAMD13Q5VXD3 122 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 IGFL4Q6B9Z1 124 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 LGALS9CQ6DKI2 356 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 SLC25A34Q6PIV7 304 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 LINC00173Q6ZV60 143 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 IL17RELQ6ZVW7 336 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 RNF182Q8N6D2 247 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 PIFOQ8TCI5 191 aa5.58□□□□□ -1.52
VPS13C-206ENST00000558338 NXT2Q9NPJ8 142 aaKnown RBP5.58□□□□□ -1.52
VPS13C-206ENST00000558338 ZZEF1O43149 2961 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 ABCA1O95477 2261 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 LINC01546A6NGU7 62 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 PRAC2D3DTV9 90 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 DLEU1O43261 78 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 BRD3OSQ6XYD6 125 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 LINC00477Q96M19 166 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 AGPAT4-IT1Q9H0P7 198 aa5.57□□□□□ -1.52
VPS13C-206ENST00000558338 HRNRQ86YZ3 2850 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-206ENST00000558338 HIVEP3Q5T1R4 2406 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV3OR16-10A0A075B7F0 116 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV3-66A0A0C4DH42 116 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 TRBV7-9A0A0J9YWB2 115 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 LOC389332A0A1B0GUA5 103 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 B4DSR2 109 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 H3BUX3 64 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 SLC25A16P16260 332 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 PPIFP30405 207 aaKnown RBP5.56□□□□□ -1.52
VPS13C-206ENST00000558338 ZNF738Q8NE65 137 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 OR1N2Q8NGR9 330 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 OR10J6PQ8NGY7 276 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 SCRT2Q9NQ03 307 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV4-4A0A075B6R2 117 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV4-30-2A0A087WSY4 118 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 SNAI2O43623 268 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 ZNF207O43670 478 aaKnown RBP5.56□□□□□ -1.52
VPS13C-206ENST00000558338 NPYP01303 97 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV4-38-2P0DP08 117 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 PRB4P10163 310 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-206ENST00000558338 G0S2P27469 103 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 C12orf54Q6X4T0 127 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 RNF185Q96GF1 192 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 TMEM208Q9BTX3 173 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 GOLT1BQ9Y3E0 138 aa5.56□□□□□ -1.52
VPS13C-206ENST00000558338 TIMM8BQ9Y5J9 83 aaPredicted RBP5.56□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV3OR16-13A0A075B7E8 117 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV3-74A0A0B4J1X5 117 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 TRAV21A0A0B4J279 112 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 IGKV3D-20A0A0C4DH25 116 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 A0A1W2PRX2 142 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 hDV102S1A0JD36 115 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 J3QLI3 93 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 MED14OSP0DP75 135 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 LY6EQ16553 131 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 OR8A1Q8NGG7 326 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 ORAOV1Q8WV07 137 aa5.55□□□□□ -1.52
VPS13C-206ENST00000558338 COL6A6A6NMZ7 2263 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 A0A096LNJ9 63 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 IGHV3-49A0A0A0MS15 119 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 TMEM89A2RUT3 159 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 IGLV1-40P01703 118 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 COX8AP10176 69 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 HINT1P49773 126 aaPredicted RBP5.54□□□□□ -1.52
VPS13C-206ENST00000558338 DEFB125Q8N687 156 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 STPG4Q8N801 248 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 IFI27L1Q96BM0 104 aa5.54□□□□□ -1.52
VPS13C-206ENST00000558338 MRAP2Q96G30 205 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms