RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 OR1B1Q8NGR6 318 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 ANAPC16Q96DE5 110 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 PAXXQ9BUH6 204 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 OR51M1Q9H341 326 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 SEPSECSQ9HD40 501 aaKnown RBP5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 DOK5Q9P104 306 aa5.76□□□□□ -1.49
CCDC88C-214ENST00000557507 TEX48A0A1B0GUV7 120 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 SMIM9A6NGZ8 99 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 C9JQL5 133 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 SCO1O75880 301 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 TOMM40O96008 361 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 IGKV3-20P01619 116 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 FAM3BP58499 235 aaPredicted RBP5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 SNRPD3P62318 126 aaKnown RBP5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 USF2Q15853 346 aaPredicted RBP5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 GCSAMLQ5JQS6 135 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 KCNIP4Q6PIL6 250 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 LINC00305Q7Z4B0 112 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 ZNRF2Q8NHG8 242 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 NRN1Q9NPD7 142 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 BIN3Q9NQY0 253 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 YTHDF2Q9Y5A9 579 aaKnown RBP5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 LY96Q9Y6Y9 160 aa5.75□□□□□ -1.49
CCDC88C-214ENST00000557507 IGKV1OR2-108A0A075B7D4 117 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 FAM74A7A6NL05 159 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 K7EQM0 130 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 IGLC1P0CG04 106 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 KRTAP10-2P60368 255 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 UBE2G2P60604 165 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 LYZP61626 148 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 ZNF90Q03938 601 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 MIR17HGQ75NE6 70 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 SSX7Q7RTT5 188 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 BPIFA4PQ86YQ2 179 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 C15orf53Q8NAA6 179 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 HIST1H2BAQ96A08 127 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 GPR82Q96P67 336 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 ATG101Q9BSB4 218 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 PARLQ9H300 379 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 TMPRSS5Q9H3S3 457 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 SDF2L1Q9HCN8 221 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 TMEM14CQ9P0S9 112 aa5.74□□□□□ -1.49
CCDC88C-214ENST00000557507 VPS13BQ7Z7G8 4022 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 IGKV1D-37A0A075B6S9 117 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 C9JCJ5 164 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 PSG1P11464 419 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 MEOX2P50222 304 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 CNN1P51911 297 aaKnown RBP5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 TAS2R60P59551 318 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 RAB5BP61020 215 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 DAD1P61803 113 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 ADIRFQ15847 76 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 SIGLEC15Q6ZMC9 328 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 C1orf158Q8N1D5 194 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 LYPD1Q8N2G4 141 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 CMTM2Q8TAZ6 248 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 TMEM37Q8WXS4 190 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 C11orf52Q96A22 123 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 RNF125Q96EQ8 232 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 KRTAP1-5Q9BYS1 174 aa5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 SAV1Q9H4B6 383 aaPredicted RBP5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 TMA7Q9Y2S6 64 aaKnown RBP5.73□□□□□ -1.49
CCDC88C-214ENST00000557507 SERTM2A0A1B0GWG4 89 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 FBLL1A6NHQ2 334 aaKnown RBP5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 C1orf196B1AJZ1 125 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 H7BYZ3 331 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 BUB3O43684 328 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 NDUFB4O95168 129 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 IL4P05112 153 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 NBEAP1P0C6P0 100 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 RPL7P18124 248 aaKnown RBP5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 GATA2P23769 480 aaPredicted RBP5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 AKR1C3P42330 323 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 GNG4P50150 75 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 PSG9Q00887 426 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 ATRAIDQ6UW56 229 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 SMIM12Q96EX1 92 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 IMMP2LQ96T52 175 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 SLC25A2Q9BXI2 301 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 SLC25A39Q9BZJ4 359 aaPredicted RBP5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 GOLT1BQ9Y3E0 138 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 LINC00588Q9Y4M8 146 aa5.72□□□□□ -1.49
CCDC88C-214ENST00000557507 EPM2AB3EWF7 344 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 F6UB75 175 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 SOCS3O14543 225 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 PRM2P04554 102 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 OR10J4P0C629 311 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 INAFM2P0DMQ5 153 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 HIST1H1EP10412 219 aaKnown RBP5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 CSN1S1P47710 185 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 ATP5G3P48201 142 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 UBE2G1P62253 170 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 SUMO1P63165 101 aaKnown RBP5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 FLI1Q01543 452 aaPredicted RBP5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 PDE6HQ13956 83 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 RRN3P1Q2M238 152 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 FOXI2Q6ZQN5 318 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 CBLN2Q8IUK8 224 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 ARL6IP6Q8N6S5 226 aa5.71□□□□□ -1.5
CCDC88C-214ENST00000557507 C5orf17Q8NAS9 161 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms