RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TREM1Q9NP99 234 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 LENEPQ9Y5L5 61 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 COL7A1Q02388 2944 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 TENM3Q9P273 2699 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 TRBV6-1A0A0K0K1D8 114 aa9.27□□□□□ -0.93
SHMT2-227ENST00000557269 C9JQL5 133 aa9.27□□□□□ -0.93
SHMT2-227ENST00000557269 PDE6DO43924 150 aa9.27□□□□□ -0.93
SHMT2-227ENST00000557269 ZNF324O75467 553 aaPredicted RBP9.27□□□□□ -0.93
SHMT2-227ENST00000557269 TAGLN2P37802 199 aaKnown RBP9.27□□□□□ -0.93
SHMT2-227ENST00000557269 RPL35P42766 123 aaKnown RBP9.27□□□□□ -0.93
SHMT2-227ENST00000557269 ZNF80P51504 273 aaPredicted RBP9.27□□□□□ -0.93
SHMT2-227ENST00000557269 RAB14P61106 215 aa9.27□□□□□ -0.93
SHMT2-227ENST00000557269 FMC1Q96HJ9 113 aa9.27□□□□□ -0.93
SHMT2-227ENST00000557269 EIF5A2Q9GZV4 153 aaKnown RBP9.27□□□□□ -0.93
SHMT2-227ENST00000557269 MED9Q9NWA0 146 aa9.27□□□□□ -0.93
SHMT2-227ENST00000557269 RAB19A4D1S5 217 aa9.26□□□□□ -0.93
SHMT2-227ENST00000557269 FBLL1A6NHQ2 334 aaKnown RBP9.26□□□□□ -0.93
SHMT2-227ENST00000557269 ZNF705GA8MUZ8 300 aaPredicted RBP9.26□□□□□ -0.93
SHMT2-227ENST00000557269 LTAP01374 205 aa9.26□□□□□ -0.93
SHMT2-227ENST00000557269 UBE2G1P62253 170 aa9.26□□□□□ -0.93
SHMT2-227ENST00000557269 NHLRC2Q8NBF2 726 aa9.26□□□□□ -0.93
SHMT2-227ENST00000557269 LINC01587Q99440 93 aa9.26□□□□□ -0.93
SHMT2-227ENST00000557269 GOLT1BQ9Y3E0 138 aa9.26□□□□□ -0.93
SHMT2-227ENST00000557269 RGS13O14921 159 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 DEFB4AO15263 64 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 SRP19P09132 144 aaKnown RBP9.25□□□□□ -0.93
SHMT2-227ENST00000557269 AZU1P20160 251 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 CRIP1P50238 77 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 SAPCD1Q5SSQ6 148 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 Q8NAQ8 132 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 ZC2HC1AQ96GY0 325 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 NDFIP1Q9BT67 221 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 U3KQK5 164 aa9.25□□□□□ -0.93
SHMT2-227ENST00000557269 TRBV20OR9-2A0A075B6H5 130 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 IGHV4-28A0A0C4DH34 117 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 GCGP01275 180 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 IGLV2-8P01709 118 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 S100A9P06702 114 aaKnown RBP9.24□□□□□ -0.93
SHMT2-227ENST00000557269 HTN1P15515 57 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 Q6AWC8 147 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 C20orf144Q9BQM9 153 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 TMEM208Q9BTX3 173 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 ZFP30Q9Y2G7 519 aa9.24□□□□□ -0.93
SHMT2-227ENST00000557269 PGPEP1LA6NFU8 196 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 TMEM250H0YL14 139 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 H7BYZ3 331 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 TAS2R60P59551 318 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 SMUG1Q53HV7 270 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 CENPWQ5EE01 88 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 MUC21Q5SSG8 566 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 COX8CQ7Z4L0 72 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 BAGE2Q86Y30 109 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 TMEM183AQ8IXX5 376 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 TMEM256Q8N2U0 113 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 NEU1Q99519 415 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 NIPSNAP3BQ9BS92 247 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 MLST8Q9BVC4 326 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 C11orf21Q9P2W6 132 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 TP53TG3Q9ULZ0 132 aa9.23□□□□□ -0.93
SHMT2-227ENST00000557269 A0A0J9YWU9 116 aa9.22□□□□□ -0.93
SHMT2-227ENST00000557269 MIFP14174 115 aa9.22□□□□□ -0.93
SHMT2-227ENST00000557269 CEBPGP53567 150 aa9.22□□□□□ -0.93
SHMT2-227ENST00000557269 ZNF674Q2M3X9 581 aa9.22□□□□□ -0.93
SHMT2-227ENST00000557269 PARLQ9H300 379 aa9.22□□□□□ -0.93
SHMT2-227ENST00000557269 TRAV21A0A0B4J279 112 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 PLAC8L1A1L4L8 177 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 SMIM9A6NGZ8 99 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 PFN1P07737 140 aaKnown RBP9.21□□□□□ -0.94
SHMT2-227ENST00000557269 GNG4P50150 75 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 PEA15Q15121 130 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 RRN3P1Q2M238 152 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 PYGO2Q9BRQ0 406 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 LINC00467Q9BRT7 94 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 EDA2RQ9HAV5 297 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 NAGKQ9UJ70 344 aa9.21□□□□□ -0.94
SHMT2-227ENST00000557269 IGHV1OR15-1A0A075B7D0 117 aa9.2□□□□□ -0.94
SHMT2-227ENST00000557269 GNRH2O43555 120 aa9.2□□□□□ -0.94
SHMT2-227ENST00000557269 SH2D1AO60880 128 aa9.2□□□□□ -0.94
SHMT2-227ENST00000557269 NDUFS6O75380 124 aaKnown RBP9.2□□□□□ -0.94
SHMT2-227ENST00000557269 EMP1P54849 157 aa9.2□□□□□ -0.94
SHMT2-227ENST00000557269 ANXA2RQ3ZCQ2 193 aa9.2□□□□□ -0.94
SHMT2-227ENST00000557269 RNASE8Q8TDE3 154 aaKnown RBP9.2□□□□□ -0.94
SHMT2-227ENST00000557269 TGP01266 2768 aa9.19□□□□□ -0.94
SHMT2-227ENST00000557269 IGKV3D-20A0A0C4DH25 116 aa9.19□□□□□ -0.94
SHMT2-227ENST00000557269 FABP5P3A8MUU1 101 aa9.19□□□□□ -0.94
SHMT2-227ENST00000557269 ZNF575Q86XF7 245 aa9.19□□□□□ -0.94
SHMT2-227ENST00000557269 EIF4E3Q8N5X7 224 aaKnown RBP9.19□□□□□ -0.94
SHMT2-227ENST00000557269 C11orf72Q8NBR9 251 aa9.19□□□□□ -0.94
SHMT2-227ENST00000557269 OCC1Q8TAD7 63 aa9.19□□□□□ -0.94
SHMT2-227ENST00000557269 MDFICQ9P1T7 246 aa9.19□□□□□ -0.94
SHMT2-227ENST00000557269 CBY3A6NI87 242 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 C9JCJ5 164 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 K7EN84 100 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 MGST1P10620 155 aaKnown RBP9.18□□□□□ -0.94
SHMT2-227ENST00000557269 OR5I1Q13606 314 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 TDRG1Q3Y452 100 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 FAM162BQ5T6X4 162 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 PRR27Q6MZM9 219 aa9.18□□□□□ -0.94
SHMT2-227ENST00000557269 C11orf68Q9H3H3 251 aaKnown RBP9.18□□□□□ -0.94
SHMT2-227ENST00000557269 SMDT1Q9H4I9 107 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms