RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 MEGF9Q9H1U4 602 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 IGLV2-18A0A075B6J9 118 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 IGHV3OR16-13A0A075B7E8 117 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 IGHV3-74A0A0B4J1X5 117 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 CBY3A6NI87 242 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 NDUFA4O00483 81 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 ARL3P36405 182 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 SPTBN2O15020 2390 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 C7orf71A4D174 169 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 ZNF207O43670 478 aaKnown RBP10.32□□□□□ -0.76
SHMT2-222ENST00000555774 TRGV3P03979 118 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 IGF1P05019 195 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 PPIFP30405 207 aaKnown RBP10.32□□□□□ -0.76
SHMT2-222ENST00000555774 ODF1Q14990 250 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 LINC00477Q96M19 166 aa10.32□□□□□ -0.76
SHMT2-222ENST00000555774 OVOL1O14753 267 aa10.31□□□□□ -0.76
SHMT2-222ENST00000555774 IGHV4-39P01824 125 aa10.31□□□□□ -0.76
SHMT2-222ENST00000555774 EVI2AP22794 236 aa10.31□□□□□ -0.76
SHMT2-222ENST00000555774 DKK2Q9UBU2 259 aa10.31□□□□□ -0.76
SHMT2-222ENST00000555774 IGHV3-49A0A0A0MS15 119 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 H3BRM9 83 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 GAS8-AS1O95177 125 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 TMEM219Q86XT9 240 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 NRACQ8N912 160 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 MRAP2Q96G30 205 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 USMG5Q96IX5 58 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 PIMREGQ9BSJ6 248 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 HLA-DRB4P13762 266 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 FOXE3Q13461 319 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 KIR3DS1Q14943 382 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 ADAMTSL5Q6ZMM2 481 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 TMEM158Q8WZ71 300 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 C18orf15Q96N68 181 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 PRORYQ9H606 182 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 HLA-DRB4X5D2U9 266 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 SPTA1P02549 2419 aa10.3□□□□□ -0.76
SHMT2-222ENST00000555774 IGKCP01834 107 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 LY6DQ14210 128 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 LAGE3Q14657 143 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 SPANXN1Q5VSR9 72 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 AMMECR1LQ6DCA0 310 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 C19orf84I3L1E1 186 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 PRSS1P07477 247 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 GATA1P15976 413 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-222ENST00000555774 NMUP48645 174 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 RNASE8Q8TDE3 154 aaKnown RBP10.29□□□□□ -0.76
SHMT2-222ENST00000555774 HIGD1BQ9P298 99 aa10.29□□□□□ -0.76
SHMT2-222ENST00000555774 TRAV21A0A0B4J279 112 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 NDUFS8O00217 210 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 SOCS3O14543 225 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 MED14OSP0DP75 135 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 WFDC3Q8IUB2 231 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 OR10J6PQ8NGY7 276 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 HRNRQ86YZ3 2850 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-222ENST00000555774 TRBV7-9A0A0J9YWB2 115 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 C9orf118A6NHY6 69 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 DPM2O94777 84 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 MYOZ3Q8TDC0 251 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 C20orf173Q96LM9 149 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 HHLA3Q9XRX5 114 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 UFC1Q9Y3C8 167 aa10.28□□□□□ -0.76
SHMT2-222ENST00000555774 TRAV8-6A0A0B4J262 113 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 IGHG2P01859 326 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 SMIM17P0DL12 118 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 SRSF1Q07955 248 aaKnown RBP eCLIP10.27□□□□□ -0.77
SHMT2-222ENST00000555774 PCP2Q8IVA1 136 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 AP1S3Q96PC3 154 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 TRAV40A0A0B4J280 105 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 RBX1P62877 108 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 PRR9Q5T870 116 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 ERASQ7Z444 233 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 GPHB5Q86YW7 130 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 ZFAND2AQ8N6M9 145 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 FOXC2Q99958 501 aa10.27□□□□□ -0.77
SHMT2-222ENST00000555774 IGHV3OR16-10A0A075B7F0 116 aa10.26□□□□□ -0.77
SHMT2-222ENST00000555774 A6NDX4 124 aa10.26□□□□□ -0.77
SHMT2-222ENST00000555774 H3BVH4 76 aa10.26□□□□□ -0.77
SHMT2-222ENST00000555774 K7EMI3 77 aa10.26□□□□□ -0.77
SHMT2-222ENST00000555774 CDKN1BP46527 198 aa10.26□□□□□ -0.77
SHMT2-222ENST00000555774 GNLYP22749 145 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 UQCRFS1P47985 274 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 UNQ9165/PRO28630Q6UXU0 137 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 GTF2H5Q6ZYL4 71 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 APRG1Q8IVJ8 170 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 C10orf105Q8TEF2 133 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 FAM19A4Q96LR4 140 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 LINC00527Q9UJ94 153 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 DCHS2Q6V1P9 2916 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 IGHV4-61A0A0C4DH41 118 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 ASIPP42127 132 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 BRD3OSQ6XYD6 125 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 C20orf78Q9BR46 151 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 SMIM2Q9BVW6 85 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 DCHS1Q96JQ0 3298 aa10.25□□□□□ -0.77
SHMT2-222ENST00000555774 SLC25A16P16260 332 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 LRBAP50851 2863 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 A0A087WX48 190 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 TRAV12-1A0A0B4J245 112 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 A0A0G2JLM5 398 aa10.24□□□□□ -0.77
SHMT2-222ENST00000555774 GAGE10A6NGK3 116 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 427.3 ms