RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 C18orf32Q8TCD1 76 aa19.92■□□□□ 0.78
CCDC88C-205ENST00000553403 ID1P41134 155 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 JOSD1Q15040 202 aaPredicted RBP19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 LYZL1Q6UWQ5 148 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 Q6ZSV7 163 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 ZANQ9Y493 2812 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 C2CD3Q4AC94 2353 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 ORM1P02763 201 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 IGLC6P0CF74 106 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 HOXD3P31249 432 aaPredicted RBP19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 CTRLP40313 264 aa19.91■□□□□ 0.78
CCDC88C-205ENST00000553403 MTORP42345 2549 aa19.9■□□□□ 0.78
CCDC88C-205ENST00000553403 FLNAP21333 2647 aaKnown RBP19.9■□□□□ 0.78
CCDC88C-205ENST00000553403 SYNJ2BPP57105 145 aa19.9■□□□□ 0.78
CCDC88C-205ENST00000553403 SCGB2A2Q13296 93 aa19.9■□□□□ 0.78
CCDC88C-205ENST00000553403 FER1L6-AS1Q8NA97 138 aa19.9■□□□□ 0.78
CCDC88C-205ENST00000553403 TPPP3Q9BW30 176 aa19.9■□□□□ 0.78
CCDC88C-205ENST00000553403 ACANP16112 2415 aa19.89■□□□□ 0.77
CCDC88C-205ENST00000553403 ZNF575Q86XF7 245 aa19.89■□□□□ 0.77
CCDC88C-205ENST00000553403 SETD2Q9BYW2 2564 aaPredicted RBP19.89■□□□□ 0.77
CCDC88C-205ENST00000553403 LOC102724200A0A096LPH7 203 aaPredicted RBP19.88■□□□□ 0.77
CCDC88C-205ENST00000553403 ZNF493Q6ZR52 646 aa19.88■□□□□ 0.77
CCDC88C-205ENST00000553403 DCANP1Q8TF63 244 aa19.88■□□□□ 0.77
CCDC88C-205ENST00000553403 KCNS1Q96KK3 526 aa19.88■□□□□ 0.77
CCDC88C-205ENST00000553403 ZNF469Q96JG9 3925 aaPredicted RBP19.88■□□□□ 0.77
CCDC88C-205ENST00000553403 IGKV3-7A0A075B6H7 116 aa19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 OR8A1Q8NGG7 326 aa19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 C4orf3Q8WVX3 66 aa19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 TMEM160Q9NX00 188 aa19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 TRBV7-9A0A0J9YWB2 115 aa19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 ZNF705DP0CH99 300 aaPredicted RBP19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 ZNF705BP0CI00 300 aaPredicted RBP19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 S100A12P80511 92 aa19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 ESM1Q9NQ30 184 aa19.87■□□□□ 0.77
CCDC88C-205ENST00000553403 PCP4L1A6NKN8 68 aa19.86■□□□□ 0.77
CCDC88C-205ENST00000553403 RCHY1Q96PM5 261 aa19.86■□□□□ 0.77
CCDC88C-205ENST00000553403 SRD5A1P18405 259 aa19.85■□□□□ 0.77
CCDC88C-205ENST00000553403 FAM19A4Q96LR4 140 aa19.85■□□□□ 0.77
CCDC88C-205ENST00000553403 SMR3AQ99954 134 aa19.85■□□□□ 0.77
CCDC88C-205ENST00000553403 SAMD10Q9BYL1 202 aa19.85■□□□□ 0.77
CCDC88C-205ENST00000553403 C2orf70A6NJV1 201 aa19.84■□□□□ 0.77
CCDC88C-205ENST00000553403 LINC01619G3V211 115 aa19.84■□□□□ 0.77
CCDC88C-205ENST00000553403 IQCJQ1A5X6 159 aa19.84■□□□□ 0.77
CCDC88C-205ENST00000553403 TCTEX1D4Q5JR98 221 aa19.84■□□□□ 0.77
CCDC88C-205ENST00000553403 WFDC12Q8WWY7 111 aa19.84■□□□□ 0.77
CCDC88C-205ENST00000553403 MS4A6AQ9H2W1 248 aa19.84■□□□□ 0.77
CCDC88C-205ENST00000553403 IGKV3D-20A0A0C4DH25 116 aa19.84■□□□□ 0.77
CCDC88C-205ENST00000553403 GPX1P07203 203 aa19.83■□□□□ 0.76
CCDC88C-205ENST00000553403 C18orf65Q6ZTR6 163 aa19.83■□□□□ 0.76
CCDC88C-205ENST00000553403 ZFAND2AQ8N6M9 145 aa19.83■□□□□ 0.76
CCDC88C-205ENST00000553403 CNFNQ9BYD5 112 aa19.83■□□□□ 0.76
CCDC88C-205ENST00000553403 C11orf21Q9P2W6 132 aa19.83■□□□□ 0.76
CCDC88C-205ENST00000553403 M0QZ24 198 aa19.82■□□□□ 0.76
CCDC88C-205ENST00000553403 RNASE1P07998 156 aaKnown RBP19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 CDPF1Q6NVV7 123 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 WFDC3Q8IUB2 231 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 APRG1Q8IVJ8 170 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 SELENOKQ9Y6D0 94 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 K7EQG2 157 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 ZNF324O75467 553 aaPredicted RBP19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 PRR31Q5SQ13 230 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 PRR9Q5T870 116 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 DPF1Q92782 380 aa19.81■□□□□ 0.76
CCDC88C-205ENST00000553403 SLURP1P55000 103 aa19.8■□□□□ 0.76
CCDC88C-205ENST00000553403 DEFB1P60022 68 aa19.8■□□□□ 0.76
CCDC88C-205ENST00000553403 OR1N2Q8NGR9 330 aa19.8■□□□□ 0.76
CCDC88C-205ENST00000553403 TRAV21A0A0B4J279 112 aa19.79■□□□□ 0.76
CCDC88C-205ENST00000553403 F6UB75 175 aa19.79■□□□□ 0.76
CCDC88C-205ENST00000553403 DMRTA1Q5VZB9 504 aa19.79■□□□□ 0.76
CCDC88C-205ENST00000553403 GSN-AS1Q9NRJ2 163 aa19.79■□□□□ 0.76
CCDC88C-205ENST00000553403 NF1P21359 2839 aa19.79■□□□□ 0.76
CCDC88C-205ENST00000553403 LY6G6DO95868 133 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 AMTP48728 403 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 SNRPD3P62318 126 aaKnown RBP19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 DEFB136Q30KP8 78 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 FAM104BQ5XKR9 115 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 Q6ZWC4 215 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 OR11H1Q8NG94 326 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 C16orf95Q9H693 158 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 PEMTQ9UBM1 199 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 TWIST1Q15672 202 aa19.78■□□□□ 0.76
CCDC88C-205ENST00000553403 NIPBLQ6KC79 2804 aaeCLIP19.77■□□□□ 0.76
CCDC88C-205ENST00000553403 NTF3P20783 257 aa19.77■□□□□ 0.76
CCDC88C-205ENST00000553403 KHDC1LQ5JSQ8 128 aa19.77■□□□□ 0.76
CCDC88C-205ENST00000553403 NIT1Q86X76 327 aa19.77■□□□□ 0.76
CCDC88C-205ENST00000553403 ADAMTSL5Q6ZMM2 481 aa19.76■□□□□ 0.75
CCDC88C-205ENST00000553403 KLHL30-AS1Q8NEE0 82 aa19.76■□□□□ 0.75
CCDC88C-205ENST00000553403 ZNF418Q8TF45 676 aaPredicted RBP19.76■□□□□ 0.75
CCDC88C-205ENST00000553403 PMCHP20382 165 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 TFPI2P48307 235 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 CHCHD1Q96BP2 118 aaKnown RBP19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 TMEM191AQ9H0A3 160 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 U3KQK5 164 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 MUC21A0A0G2JKD1 596 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 MUC21A0A140T8X8 626 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 HSBP1O75506 76 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 MUC21Q5SSG8 566 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 ODF3Q96PU9 254 aa19.75■□□□□ 0.75
CCDC88C-205ENST00000553403 ZNF688P0C7X2 276 aa19.74■□□□□ 0.75
CCDC88C-205ENST00000553403 PSMG4Q5JS54 123 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 162.3 ms