RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PHIPQ8WWQ0 1821 aa2.52□□□□□ -2.01
LIMA1-210ENST00000552045 NF1P21359 2839 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 PCDH15Q96QU1 1955 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 TRGV2A0A075B6R0 118 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 TRAV3A0A0B4J244 114 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 H0YJX3 145 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 CRHP06850 196 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 ASAH2BP0C7U1 165 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 OGNP20774 298 aaKnown RBP2.51□□□□□ -2.01
LIMA1-210ENST00000552045 INSL3P51460 131 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 ESRGQ1W209 222 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 RNASE10Q5GAN6 216 aaKnown RBP2.51□□□□□ -2.01
LIMA1-210ENST00000552045 TEX37Q96LM6 180 aa2.51□□□□□ -2.01
LIMA1-210ENST00000552045 GPX7Q96SL4 187 aaPredicted RBP2.51□□□□□ -2.01
LIMA1-210ENST00000552045 LAMA5O15230 3695 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 TRBV6-5A0A0K0K1A5 114 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 MAP1LC3B2A6NCE7 125 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 PIAS1O75925 651 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 DYNLT3P51808 116 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 TFAMQ00059 246 aaKnown RBP2.5□□□□□ -2.01
LIMA1-210ENST00000552045 LTC4SQ16873 150 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 TMEM78Q5T7P6 136 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 DCUN1D2Q6PH85 259 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 DEFB124Q8NES8 71 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 MAP1LC3BQ9GZQ8 125 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 MRPL40Q9NQ50 206 aaKnown RBP2.5□□□□□ -2.01
LIMA1-210ENST00000552045 HS3ST2Q9Y278 367 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 MICAL3Q7RTP6 2002 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 MTORP42345 2549 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 ANAPC1Q9H1A4 1944 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 WDFY3Q8IZQ1 3526 aa2.5□□□□□ -2.01
LIMA1-210ENST00000552045 SCN8AQ9UQD0 1980 aa2.49□□□□□ -2.01
LIMA1-210ENST00000552045 IFNA21P01568 189 aa2.49□□□□□ -2.01
LIMA1-210ENST00000552045 IFNA14P01570 189 aa2.49□□□□□ -2.01
LIMA1-210ENST00000552045 TRGC2P03986 189 aa2.49□□□□□ -2.01
LIMA1-210ENST00000552045 SSR2P43308 183 aa2.49□□□□□ -2.01
LIMA1-210ENST00000552045 RPS19BP1Q86WX3 136 aaKnown RBP2.49□□□□□ -2.01
LIMA1-210ENST00000552045 DYDC1Q8WWB3 177 aa2.49□□□□□ -2.01
LIMA1-210ENST00000552045 NBEAL1Q6ZS30 2694 aa2.49□□□□□ -2.01
LIMA1-210ENST00000552045 COL11A1P12107 1806 aaPredicted RBP2.48□□□□□ -2.01
LIMA1-210ENST00000552045 TIMM17BO60830 172 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 UBL3O95164 117 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 RHOGP84095 191 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 FKBP1CQ5VVH2 108 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 LINC00311Q8N616 119 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 SLC25A21Q9BQT8 299 aaPredicted RBP2.48□□□□□ -2.01
LIMA1-210ENST00000552045 DDA1Q9BW61 102 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 EML6Q6ZMW3 1958 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 DOPEY2Q9Y3R5 2298 aa2.48□□□□□ -2.01
LIMA1-210ENST00000552045 SPAARA0A1B0GVQ0 90 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 TLCD2A6NGC4 264 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 C5orf67F2Z3F1 127 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 PROSCO94903 275 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 GADD45GO95257 159 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 MYL5Q02045 173 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 ANP32BQ92688 251 aaKnown RBP2.47□□□□□ -2.01
LIMA1-210ENST00000552045 RTL8AQ9BWD3 113 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 NPCDR1Q9BY65 106 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 MED11Q9P086 117 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 RP1P56715 2156 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 FREM1Q5H8C1 2179 aa2.47□□□□□ -2.01
LIMA1-210ENST00000552045 BAZ2BQ9UIF8 2168 aaKnown RBP2.47□□□□□ -2.01
LIMA1-210ENST00000552045 F8P00451 2351 aa2.46□□□□□ -2.01
LIMA1-210ENST00000552045 TRAV14DV4A0A0A6YYC5 116 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 C2orf70A6NJV1 201 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 HLA-EP13747 358 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 LINC00301Q8NCQ3 95 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 OR10K1Q8NGX5 313 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 PPTC7Q8NI37 304 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 ZNF418Q8TF45 676 aaPredicted RBP2.46□□□□□ -2.02
LIMA1-210ENST00000552045 LINC00467Q9BRT7 94 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 POPDC3Q9HBV1 291 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 OR5AC2Q9NZP5 309 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 OR52A1Q9UKL2 312 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 AKAP13Q12802 2813 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 FBN1P35555 2871 aaKnown RBP2.46□□□□□ -2.02
LIMA1-210ENST00000552045 CR1P17927 2039 aa2.46□□□□□ -2.02
LIMA1-210ENST00000552045 NUP98P52948 1817 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 RP1L1Q8IWN7 2480 aaPredicted RBP2.45□□□□□ -2.02
LIMA1-210ENST00000552045 HEATR5BQ9P2D3 2071 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 COL4A1P02462 1669 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 A8MWV9 139 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 OR1I1O60431 355 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 LYZL6O75951 148 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 EIF5AL1Q6IS14 154 aaKnown RBP2.45□□□□□ -2.02
LIMA1-210ENST00000552045 IFT20Q8IY31 132 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 Q8IYB0 196 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 ZNF563Q8TA94 476 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 C14orf132Q9NPU4 83 aa2.45□□□□□ -2.02
LIMA1-210ENST00000552045 MYH10P35580 1976 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 NBPF19A0A087WUL8 3843 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 GNG14A0A1W2PPG7 69 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 A0A1W2PRE2 83 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 PFDN1O60925 122 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 CXCL1P09341 107 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 PDE6HQ13956 83 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 C10orf55Q5SWW7 151 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 KRTAP5-2Q701N4 177 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 TEX47Q8TBZ9 253 aa2.44□□□□□ -2.02
LIMA1-210ENST00000552045 ADAT1Q9BUB4 502 aaKnown RBP2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms