RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 NAPSAO96009 420 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 LTAP01374 205 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 PRB1P04280 392 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SCTP09683 121 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SMIM6P0DI80 62 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 RD3LP0DJH9 198 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 HIST1H1EP10412 219 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF22P17026 224 aaPredicted RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ORM2P19652 201 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 NPPCP23582 126 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 S100PP25815 95 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 RPL12P30050 165 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 LPAR6P43657 344 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 RPL27AP46776 148 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 PSMB3P49720 205 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 GNG10P50151 68 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SULT1A1P50225 295 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 RAB5BP61020 215 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ERVS71-1P61550 626 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 HSPE1P61604 102 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SNRPD3P62318 126 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 RANP62826 216 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SERF2P84101 59 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 AKR1C1Q04828 323 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TFF3Q07654 80 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 PEA15Q15121 130 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 RHEBQ15382 184 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 GUK1Q16774 197 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ACOT6Q3I5F7 207 aaPredicted RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 Q56UQ5 140 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 CENPWQ5EE01 88 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SPANXN5Q5MJ07 72 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 OR10K2Q6IF99 312 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 EBLN2Q6P2I7 272 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 DPPA3Q6W0C5 159 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF826PQ6ZT77 177 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TCF24Q7RTU0 167 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SMIM15Q7Z3B0 74 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 VMO1Q7Z5L0 202 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SLC35E3Q7Z769 313 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 FAM223AQ8IWN6 122 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 PDZD9Q8IXQ8 264 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TCTE3Q8IZS6 198 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SVBPQ8N300 66 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 LINC00311Q8N616 119 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 FAM216BQ8N7L0 139 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 C3orf56Q8N813 242 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 Q8NAQ8 132 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 LFNGQ8NES3 379 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 OR2T35Q8NGX2 323 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 OR10AC1Q8NH08 325 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ZNRF2Q8NHG8 242 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 CLDND2Q8NHS1 167 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 LHFPL5Q8TAF8 219 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 MRPL30Q8TCC3 161 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 BORCS7Q96B45 105 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 GAFA1Q96PS6 74 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 OR4C12Q96R67 309 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TXNDC17Q9BRA2 123 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM147Q9BVK8 224 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ZNF471Q9BX82 626 aaPredicted RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SPANXDQ9BXN6 97 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 BPESC1Q9GZL8 116 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 EIF5A2Q9GZV4 153 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM222Q9H0R3 208 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SMDT1Q9H4I9 107 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TUBA4BQ9H853 241 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 SLC2A9Q9NRM0 540 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 LYRM2Q9NU23 88 aaPredicted RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 UQCC1Q9NVA1 299 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 MED9Q9NWA0 146 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 BET1LQ9NYM9 111 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 METTL1Q9UBP6 276 aaKnown RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 UFC1Q9Y3C8 167 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TIMM9Q9Y5J7 89 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 HILPDAQ9Y5L2 63 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM56-RWDD3S4R434 201 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 FCGBPQ9Y6R7 5405 aaPredicted RBP1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ANKRD36A6QL64 1941 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 PTPRSQ13332 1948 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 ALPK3Q96L96 1907 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 DOCK4Q8N1I0 1966 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 XIRP2A4UGR9 3374 aa1.06□□□□□ -2.24
LIMA1-209ENST00000552008 F5P12259 2224 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TNRC18O15417 2968 aaPredicted RBP1.05□□□□□ -2.24
LIMA1-209ENST00000552008 BDP1A6H8Y1 2624 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ANAPC1Q9H1A4 1944 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 FXYD6-FXYD2A0A087WZ82 144 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TRAV41A0A0B4J266 112 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 IGKV1-12A0A0C4DH73 117 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 A0A1W2PNM2 257 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TCRBV4S1A1TA0A5B7 111 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 IGSF23A1L1A6 192 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 TMEM218A2RU14 115 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 OR4C46A6NHA9 309 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 FNDC10F2Z333 226 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 H3BUX3 64 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 J3QR89 54 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 ARPC5O15511 151 aa1.05□□□□□ -2.24
LIMA1-209ENST00000552008 PDE6DO43924 150 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms