RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ETV6P41212 452 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 ATP5G3P48201 142 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 RAB5CP51148 216 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 SUB1P53999 127 aaKnown RBP eCLIP2.4□□□□□ -2.03
LIMA1-206ENST00000550611 TMBIM6P55061 237 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 RAB11AP62491 216 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 RPL19P84098 196 aaKnown RBP2.4□□□□□ -2.03
LIMA1-206ENST00000550611 CD300CQ08708 224 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 FGL1Q08830 312 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 SRSF9Q13242 221 aaKnown RBP eCLIP2.4□□□□□ -2.03
LIMA1-206ENST00000550611 RAB31Q13636 194 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 ESRGQ1W209 222 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 SPINK9Q5DT21 86 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 TTC32Q5I0X7 151 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 LELP1Q5T871 98 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 FAM78BQ5VT40 261 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 SFXN4Q6P4A7 337 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 Q6ZVQ6 151 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 TMED4Q7Z7H5 227 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 CMTM1Q8IZ96 169 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 EIF4E3Q8N5X7 224 aaKnown RBP2.4□□□□□ -2.03
LIMA1-206ENST00000550611 HSD17B11Q8NBQ5 300 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 OR1S2Q8NGQ3 325 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 DYNC2LI1Q8TCX1 351 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 Q8WTZ3 238 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 IGF2BP2-AS1Q96M15 143 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 FAM218AQ96MZ4 157 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 GGACTQ9BVM4 153 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 TXNL4BQ9NX01 149 aaKnown RBP2.4□□□□□ -2.03
LIMA1-206ENST00000550611 EHFQ9NZC4 300 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 KLK11Q9UBX7 282 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 FLVCR2Q9UPI3 526 aa2.4□□□□□ -2.03
LIMA1-206ENST00000550611 MEIS3P1A6NDR6 274 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 ZNF705GA8MUZ8 300 aaPredicted RBP2.39□□□□□ -2.03
LIMA1-206ENST00000550611 C1orf196B1AJZ1 125 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 F5H768 121 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 F6UB75 175 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 H3BNG1 76 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 M0R143 59 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 ISLRO14498 428 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 GOSR2O14653 212 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 SSNA1O43805 119 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 PMP2P02689 132 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 PPBPP02775 128 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 IL4P05112 153 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 PET100P0DJ07 73 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 RD3LP0DJH9 198 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 DEFB130BP0DP73 79 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 DEFB130AP0DP74 79 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 SLC25A4P12235 298 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 PVALBP20472 110 aaPredicted RBP2.39□□□□□ -2.03
LIMA1-206ENST00000550611 PSMB9P28065 219 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 S100A2P29034 98 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 DDTP30046 118 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 OR10J1P30954 320 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 S100A11P31949 105 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 SDC2P34741 201 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 ID1P41134 155 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 OPRK1P41145 380 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 PSMB3P49720 205 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 RND2P52198 227 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 LINC00315P59091 139 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 TAS2R20P59543 309 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 RND3P61587 244 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 RBX1P62877 108 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 MRPS10P82664 201 aaKnown RBP2.39□□□□□ -2.03
LIMA1-206ENST00000550611 ATP6V1FQ16864 119 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 C2orf83Q53S99 150 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 CLLU1Q5K131 121 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 C1orf194Q5T5A4 169 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 OR8G2PQ6IF36 304 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 Q6ZRP5 223 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 NOTCH2NLQ7Z3S9 236 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 MRPL52Q86TS9 123 aaKnown RBP2.39□□□□□ -2.03
LIMA1-206ENST00000550611 LINC00612Q8N6U2 182 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 OR4B1Q8NGF8 309 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 RNASEH2CQ8TDP1 164 aaKnown RBP2.39□□□□□ -2.03
LIMA1-206ENST00000550611 RXFP4Q8TDU9 374 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 GLYATL2Q8WU03 294 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 RAB2BQ8WUD1 216 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 GPR146Q96CH1 333 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 LINC00052Q96N35 136 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 SRRQ9GZT4 340 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 MAGT1Q9H0U3 335 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 ZNF586Q9NXT0 402 aa2.39□□□□□ -2.03
LIMA1-206ENST00000550611 MRPS16Q9Y3D3 137 aaKnown RBP2.39□□□□□ -2.03
LIMA1-206ENST00000550611 IGKV1D-37A0A075B6S9 117 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 A0A087WTM6 91 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 A0A087X002 238 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 C20orf202A1L168 122 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 SMCO3A2RU48 225 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 SMLR1H3BR10 107 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 K7EP13 123 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 M0R036 132 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 GSTZ1O43708 216 aaPredicted RBP2.38□□□□□ -2.03
LIMA1-206ENST00000550611 NBEAP1P0C6P0 100 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 HRH1P35367 487 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 TAS2R46P59540 309 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 HERV-K104P63124 156 aa2.38□□□□□ -2.03
LIMA1-206ENST00000550611 SUPT4H1P63272 117 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms