RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NDFIP1Q9BT67 221 aa15.39■□□□□ 0.05
VPS29-206ENST00000549578 DERL1Q9BUN8 251 aa15.39■□□□□ 0.05
VPS29-206ENST00000549578 TRAV12-3A0A0B4J271 114 aa15.38■□□□□ 0.05
VPS29-206ENST00000549578 C8orf49Q96NF6 230 aa15.38■□□□□ 0.05
VPS29-206ENST00000549578 GOLT1BQ9Y3E0 138 aa15.38■□□□□ 0.05
VPS29-206ENST00000549578 C7orf71A4D174 169 aa15.38■□□□□ 0.05
VPS29-206ENST00000549578 ZNF705AQ6ZN79 300 aaPredicted RBP15.38■□□□□ 0.05
VPS29-206ENST00000549578 OR11H2Q8NH07 326 aa15.38■□□□□ 0.05
VPS29-206ENST00000549578 TMEM208Q9BTX3 173 aa15.38■□□□□ 0.05
VPS29-206ENST00000549578 MED9Q9NWA0 146 aa15.38■□□□□ 0.05
VPS29-206ENST00000549578 RPL35P42766 123 aaKnown RBP15.37■□□□□ 0.05
VPS29-206ENST00000549578 Q6ZQT7 251 aa15.37■□□□□ 0.05
VPS29-206ENST00000549578 TRBV6-1A0A0K0K1D8 114 aa15.36■□□□□ 0.05
VPS29-206ENST00000549578 RGS13O14921 159 aa15.36■□□□□ 0.05
VPS29-206ENST00000549578 X6R8D5 127 aa15.36■□□□□ 0.05
VPS29-206ENST00000549578 LTAP01374 205 aa15.35■□□□□ 0.05
VPS29-206ENST00000549578 S100A9P06702 114 aaKnown RBP15.35■□□□□ 0.05
VPS29-206ENST00000549578 SRSF3P84103 164 aaKnown RBP15.35■□□□□ 0.05
VPS29-206ENST00000549578 SAPCD1Q5SSQ6 148 aa15.35■□□□□ 0.05
VPS29-206ENST00000549578 ZNF324O75467 553 aaPredicted RBP15.34■□□□□ 0.05
VPS29-206ENST00000549578 PRM2P04554 102 aa15.34■□□□□ 0.05
VPS29-206ENST00000549578 NHLRC2Q8NBF2 726 aa15.34■□□□□ 0.05
VPS29-206ENST00000549578 LINC01587Q99440 93 aa15.34■□□□□ 0.05
VPS29-206ENST00000549578 C20orf144Q9BQM9 153 aa15.34■□□□□ 0.05
VPS29-206ENST00000549578 NIPSNAP3BQ9BS92 247 aa15.34■□□□□ 0.05
VPS29-206ENST00000549578 ZFP30Q9Y2G7 519 aa15.34■□□□□ 0.05
VPS29-206ENST00000549578 TMEM250H0YL14 139 aa15.33■□□□□ 0.05
VPS29-206ENST00000549578 ZNF80P51504 273 aaPredicted RBP15.33■□□□□ 0.05
VPS29-206ENST00000549578 CEBPGP53567 150 aa15.33■□□□□ 0.05
VPS29-206ENST00000549578 SMUG1Q53HV7 270 aa15.33■□□□□ 0.05
VPS29-206ENST00000549578 TGP01266 2768 aa15.33■□□□□ 0.04
VPS29-206ENST00000549578 RAB19A4D1S5 217 aa15.33■□□□□ 0.04
VPS29-206ENST00000549578 GCGP01275 180 aa15.33■□□□□ 0.04
VPS29-206ENST00000549578 TMEM256Q8N2U0 113 aa15.33■□□□□ 0.04
VPS29-206ENST00000549578 C9JQL5 133 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 H7BYZ3 331 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 SRP19P09132 144 aaKnown RBP15.32■□□□□ 0.04
VPS29-206ENST00000549578 HTN1P15515 57 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 TAS2R60P59551 318 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 CENPWQ5EE01 88 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 Q6AWC8 147 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 BAGE2Q86Y30 109 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 ZC2HC1AQ96GY0 325 aa15.32■□□□□ 0.04
VPS29-206ENST00000549578 ZNF705GA8MUZ8 300 aaPredicted RBP15.31■□□□□ 0.04
VPS29-206ENST00000549578 PEA15Q15121 130 aa15.31■□□□□ 0.04
VPS29-206ENST00000549578 ZNF674Q2M3X9 581 aa15.31■□□□□ 0.04
VPS29-206ENST00000549578 TMEM183AQ8IXX5 376 aa15.31■□□□□ 0.04
VPS29-206ENST00000549578 PARLQ9H300 379 aa15.31■□□□□ 0.04
VPS29-206ENST00000549578 U3KQK5 164 aa15.31■□□□□ 0.04
VPS29-206ENST00000549578 TRBV20OR9-2A0A075B6H5 130 aa15.3■□□□□ 0.04
VPS29-206ENST00000549578 DEFB4AO15263 64 aa15.3■□□□□ 0.04
VPS29-206ENST00000549578 Q8NAQ8 132 aa15.3■□□□□ 0.04
VPS29-206ENST00000549578 NEU1Q99519 415 aa15.3■□□□□ 0.04
VPS29-206ENST00000549578 TRAV21A0A0B4J279 112 aa15.29■□□□□ 0.04
VPS29-206ENST00000549578 IGHV4-28A0A0C4DH34 117 aa15.29■□□□□ 0.04
VPS29-206ENST00000549578 NDUFS6O75380 124 aaKnown RBP15.29■□□□□ 0.04
VPS29-206ENST00000549578 MUC21Q5SSG8 566 aa15.29■□□□□ 0.04
VPS29-206ENST00000549578 COX8CQ7Z4L0 72 aa15.29■□□□□ 0.04
VPS29-206ENST00000549578 STAB2Q8WWQ8 2551 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 PGPEP1LA6NFU8 196 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 MIFP14174 115 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 AZU1P20160 251 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 GNG4P50150 75 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 RRN3P1Q2M238 152 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 PYGO2Q9BRQ0 406 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 MLST8Q9BVC4 326 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 NAGKQ9UJ70 344 aa15.28■□□□□ 0.04
VPS29-206ENST00000549578 SMIM9A6NGZ8 99 aa15.27■□□□□ 0.04
VPS29-206ENST00000549578 PFN1P07737 140 aaKnown RBP15.27■□□□□ 0.04
VPS29-206ENST00000549578 CRIP1P50238 77 aa15.27■□□□□ 0.04
VPS29-206ENST00000549578 IGLV2-8P01709 118 aa15.27■□□□□ 0.03
VPS29-206ENST00000549578 SMDT1Q9H4I9 107 aa15.27■□□□□ 0.03
VPS29-206ENST00000549578 IGHV1OR15-1A0A075B7D0 117 aa15.26■□□□□ 0.03
VPS29-206ENST00000549578 A0A0J9YWU9 116 aa15.26■□□□□ 0.03
VPS29-206ENST00000549578 C11orf21Q9P2W6 132 aa15.26■□□□□ 0.03
VPS29-206ENST00000549578 CBY3A6NI87 242 aa15.25■□□□□ 0.03
VPS29-206ENST00000549578 SH2D1AO60880 128 aa15.25■□□□□ 0.03
VPS29-206ENST00000549578 SMIM7Q9BQ49 75 aa15.25■□□□□ 0.03
VPS29-206ENST00000549578 TP53TG3Q9ULZ0 132 aa15.25■□□□□ 0.03
VPS29-206ENST00000549578 FABP5P3A8MUU1 101 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 C9JCJ5 164 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 MGST1P10620 155 aaKnown RBP15.24■□□□□ 0.03
VPS29-206ENST00000549578 EMP1P54849 157 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 ANXA2RQ3ZCQ2 193 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 FAM162BQ5T6X4 162 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 PRR27Q6MZM9 219 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 FAM159AQ6UWV7 190 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 EIF4E3Q8N5X7 224 aaKnown RBP15.24■□□□□ 0.03
VPS29-206ENST00000549578 LINC00467Q9BRT7 94 aa15.24■□□□□ 0.03
VPS29-206ENST00000549578 ZNF727A8MUV8 499 aa15.23■□□□□ 0.03
VPS29-206ENST00000549578 RNASE8Q8TDE3 154 aaKnown RBP15.23■□□□□ 0.03
VPS29-206ENST00000549578 C11orf68Q9H3H3 251 aaKnown RBP15.23■□□□□ 0.03
VPS29-206ENST00000549578 TMEM263Q8WUH6 116 aaKnown RBP15.22■□□□□ 0.03
VPS29-206ENST00000549578 SMIM12Q96EX1 92 aa15.22■□□□□ 0.03
VPS29-206ENST00000549578 COMMD7Q86VX2 200 aa15.22■□□□□ 0.03
VPS29-206ENST00000549578 OCC1Q8TAD7 63 aa15.22■□□□□ 0.03
VPS29-206ENST00000549578 C16orf74Q96GX8 76 aa15.22■□□□□ 0.03
VPS29-206ENST00000549578 PLAC8L1A1L4L8 177 aa15.21■□□□□ 0.03
VPS29-206ENST00000549578 TDRG1Q3Y452 100 aa15.21■□□□□ 0.03
VPS29-206ENST00000549578 IGKV3D-20A0A0C4DH25 116 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms