RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 IGHV3-30-5P0DP03 117 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 SDC4P31431 198 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 ETV6P41212 452 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 DNAJB13P59910 316 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 LSM3P62310 102 aaKnown RBP0.79□□□□□ -2.28
VPS29-205ENST00000548539 SMIM7Q9BQ49 75 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 COMMD3Q9UBI1 195 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 CNTRLQ7Z7A1 2325 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 DSPPQ9NZW4 1301 aa0.79□□□□□ -2.28
VPS29-205ENST00000548539 TMEM189A5PLL7 270 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 UQCRQO14949 82 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 MT-ND4LP03901 98 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 IL7P13232 177 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 CCL4P13236 92 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 CKS2P33552 79 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 SPINT3P49223 89 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 DR1Q01658 176 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 OR8I2Q8N0Y5 310 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 C10orf111Q8N326 155 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 OR8J3Q8NGG0 315 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 OTOSQ8NHW6 89 aa0.78□□□□□ -2.28
VPS29-205ENST00000548539 PTPRDP23468 1912 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 K7EIL1 84 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 DPM2O94777 84 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 IGKCP01834 107 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 GYPBP06028 91 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 PCBD1P61457 104 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 RPS28P62857 69 aaKnown RBP0.77□□□□□ -2.29
VPS29-205ENST00000548539 OR8B8Q15620 311 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 SPINK9Q5DT21 86 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 CALML5Q9NZT1 146 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 MED23Q9ULK4 1368 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 OVOS2A0A0G2JMS6 1433 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 USP54Q70EL1 1684 aa0.77□□□□□ -2.29
VPS29-205ENST00000548539 TRAV36DV7A0A075B6V5 113 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 IGHV1-24A0A0C4DH33 117 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 IFITM5A6NNB3 132 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 DEGS1O15121 323 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 PAEPP09466 180 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 PSPHP78330 225 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 IQCJQ1A5X6 159 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 HSD17B12Q53GQ0 312 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 Q5XG85 94 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 KRTAP19-3Q7Z4W3 81 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 PLAC4Q8WY50 150 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 MRPL36Q9P0J6 103 aaKnown RBP0.76□□□□□ -2.29
VPS29-205ENST00000548539 FANCMQ8IYD8 2048 aa0.76□□□□□ -2.29
VPS29-205ENST00000548539 A0A0D9SG42 100 aa0.75□□□□□ -2.29
VPS29-205ENST00000548539 TMEM30CPA0ZSE6 113 aa0.75□□□□□ -2.29
VPS29-205ENST00000548539 CMPK1P30085 196 aa0.75□□□□□ -2.29
VPS29-205ENST00000548539 CCSMST1Q4G0I0 132 aa0.75□□□□□ -2.29
VPS29-205ENST00000548539 AKAP14Q86UN6 197 aa0.75□□□□□ -2.29
VPS29-205ENST00000548539 FBN2P35556 2912 aa0.75□□□□□ -2.29
VPS29-205ENST00000548539 FER1L6Q2WGJ9 1857 aa0.75□□□□□ -2.29
VPS29-205ENST00000548539 MED12Q93074 2177 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 ANKRD30AQ9BXX3 1397 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 LOC101927531A0A1B0GV80 90 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 A0A1B0GW64 132 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 A6NN06 94 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 TNFSF15O95150 251 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 CAV3P56539 151 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 C6orf52Q5T4I8 152 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 TMEM244Q5VVB8 128 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 XAF1Q6GPH4 301 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 LYPD5Q6UWN5 251 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 IDO2Q6ZQW0 420 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 Q6ZS92 163 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 LINC00208Q96KT6 92 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 C19orf12Q9NSK7 152 aa0.74□□□□□ -2.29
VPS29-205ENST00000548539 CTTNBP2Q8WZ74 1663 aa0.73□□□□□ -2.29
VPS29-205ENST00000548539 A0A1B0GX51 115 aa0.73□□□□□ -2.29
VPS29-205ENST00000548539 TPST1O60507 370 aa0.73□□□□□ -2.29
VPS29-205ENST00000548539 ZNF137PP52743 207 aa0.73□□□□□ -2.29
VPS29-205ENST00000548539 ATOH7Q8N100 152 aa0.73□□□□□ -2.29
VPS29-205ENST00000548539 ZFC3H1O60293 1989 aaKnown RBP0.73□□□□□ -2.29
VPS29-205ENST00000548539 TANC2Q9HCD6 1990 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 C9JAW5 83 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 HIST1H1BP16401 226 aaKnown RBP0.72□□□□□ -2.29
VPS29-205ENST00000548539 KDELR1P24390 212 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 RHOHQ15669 191 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 ZNF56Q15929 161 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 GLYATL3Q5SZD4 288 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 SPATA8Q6RVD6 105 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 TCTE3Q8IZS6 198 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 BANF2Q9H503 90 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 HIGD1AQ9Y241 93 aa0.72□□□□□ -2.29
VPS29-205ENST00000548539 A0A0G2JMM0 328 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 LY6G6CO95867 125 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 IGF2P01344 180 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 ADCYAP1P18509 176 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 EVI2AP22794 236 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 FXYD3Q14802 87 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 C10orf95Q9H7T3 257 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 MRPL35Q9NZE8 188 aaKnown RBP0.71□□□□□ -2.3
VPS29-205ENST00000548539 METTL1Q9UBP6 276 aaKnown RBP0.71□□□□□ -2.3
VPS29-205ENST00000548539 JPT1Q9UK76 154 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 AHNAKQ09666 5890 aaKnown RBP0.71□□□□□ -2.3
VPS29-205ENST00000548539 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.71□□□□□ -2.3
VPS29-205ENST00000548539 NOTCH1P46531 2555 aa0.71□□□□□ -2.3
VPS29-205ENST00000548539 KIAA1549LQ6ZVL6 1849 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms