RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TMEM37Q8WXS4 190 aa5.91□□□□□ -1.46
USP28-215ENST00000545608 C16orf74Q96GX8 76 aa5.91□□□□□ -1.46
USP28-215ENST00000545608 PFDN5Q99471 154 aa5.91□□□□□ -1.46
USP28-215ENST00000545608 PARD6GQ9BYG4 376 aaPredicted RBP5.91□□□□□ -1.46
USP28-215ENST00000545608 NOP10Q9NPE3 64 aaKnown RBP5.91□□□□□ -1.46
USP28-215ENST00000545608 ZNF331Q9NQX6 463 aaPredicted RBP5.91□□□□□ -1.46
USP28-215ENST00000545608 GSKIPQ9P0R6 139 aa5.91□□□□□ -1.46
USP28-215ENST00000545608 RCL1Q9Y2P8 373 aaKnown RBP5.91□□□□□ -1.46
USP28-215ENST00000545608 LINC00588Q9Y4M8 146 aa5.91□□□□□ -1.46
USP28-215ENST00000545608 TIMM8BQ9Y5J9 83 aaPredicted RBP5.91□□□□□ -1.46
USP28-215ENST00000545608 MUC4Q99102 2169 aa5.91□□□□□ -1.46
USP28-215ENST00000545608 SLC17A3O00476 420 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 MBPP02686 304 aaPredicted RBP5.9□□□□□ -1.46
USP28-215ENST00000545608 CAV2P51636 162 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 CCL18P55774 89 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 LCN15Q6UWW0 184 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 ZNF493Q6ZR52 646 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 S100A7AQ86SG5 101 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 CBLN2Q8IUK8 224 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 C6orf223Q8N319 242 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 RNASE8Q8TDE3 154 aaKnown RBP5.9□□□□□ -1.46
USP28-215ENST00000545608 MGST2Q99735 147 aa5.9□□□□□ -1.46
USP28-215ENST00000545608 TRAV5A0A0B4J249 113 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 H3BQ15 152 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 H7BYZ3 331 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 CCSO14618 274 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 COX7A2P2O60397 106 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 OR5I1Q13606 314 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 RHEBQ15382 184 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 FAM74A1Q5RGS3 127 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 GFI1BQ5VTD9 330 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 SSX7Q7RTT5 188 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 BPIFA4PQ86YQ2 179 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 LINC00612Q8N6U2 182 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 TMEM263Q8WUH6 116 aaKnown RBP5.89□□□□□ -1.47
USP28-215ENST00000545608 MITD1Q8WV92 249 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 SLC50A1Q9BRV3 221 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 GGACTQ9BVM4 153 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 NMES1Q9C002 83 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 RNF24Q9Y225 148 aa5.89□□□□□ -1.47
USP28-215ENST00000545608 PKD1P98161 4303 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 PKHD1P08F94 4074 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 C5orf51A6NDU8 294 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 COLCA2A8K830 154 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 C16orf90A8MZG2 172 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 TSTD3H0UI37 97 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 J3KRW8 73 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 SFTA3P0C7M3 94 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 CT45A10P0DMU9 189 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 IGLC2P0DOY2 106 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 FABP9Q0Z7S8 132 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 CLINT1Q14677 625 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 C10orf113Q5VZT2 155 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 MIC13Q5XKP0 118 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 ZFP82Q8N141 532 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 OR10J6PQ8NGY7 276 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 PPP1R1CQ8WVI7 109 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 C20orf144Q9BQM9 153 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 SMDT1Q9H4I9 107 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 C11orf1Q9H5F2 150 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 Q9H8V8 135 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 DNAJC4Q9NNZ3 241 aa5.88□□□□□ -1.47
USP28-215ENST00000545608 LSM5Q9Y4Y9 91 aaKnown RBP5.88□□□□□ -1.47
USP28-215ENST00000545608 TRAV26-1A0A087WT03 109 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 A0A0J9YY99 117 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 GAGE12BA1L429 117 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 FAM24AA6NFZ4 105 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 GAGE7O76087 117 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 CST7O76096 145 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 TNFRSF6BO95407 300 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 GAGE12FP0CL80 117 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 GAGE12GP0CL81 117 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 GAGE12IP0CL82 117 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 RAB4AP20338 218 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 RAB5AP20339 215 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 HOXA5P20719 270 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 CAMLGP49069 296 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 VAMP2P63027 116 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 NHLH2Q02577 135 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 GNPNAT1Q96EK6 184 aaPredicted RBP5.87□□□□□ -1.47
USP28-215ENST00000545608 KRTAP1-5Q9BYS1 174 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 RPS10P5Q9NQ39 176 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 ZNF586Q9NXT0 402 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 PXMP4Q9Y6I8 212 aa5.87□□□□□ -1.47
USP28-215ENST00000545608 TRAV12-3A0A0B4J271 114 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 DIRC3C9JPN6 131 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 PPT1P50897 306 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 ESRGQ1W209 222 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 Q6ZRG5 221 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 HIST1H2BAQ96A08 127 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 WDR83OSQ9Y284 106 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 PCLOQ9Y6V0 5065 aa5.86□□□□□ -1.47
USP28-215ENST00000545608 BORCS7-ASMTA0A0B4J1R7 106 aa5.85□□□□□ -1.47
USP28-215ENST00000545608 SNURFLB1AK76 121 aa5.85□□□□□ -1.47
USP28-215ENST00000545608 M0R036 132 aa5.85□□□□□ -1.47
USP28-215ENST00000545608 M0R3E3 92 aa5.85□□□□□ -1.47
USP28-215ENST00000545608 CDK2AP2O75956 126 aa5.85□□□□□ -1.47
USP28-215ENST00000545608 ADCYAP1P18509 176 aa5.85□□□□□ -1.47
USP28-215ENST00000545608 LEPP41159 167 aa5.85□□□□□ -1.47
USP28-215ENST00000545608 RPL29P47914 159 aaKnown RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms