RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 TRAV8-1A0A0A6YYK1 113 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 TMEM189A5PLL7 270 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 TMEM250H0YL14 139 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 PRB4P10163 310 aaPredicted RBP8.84□□□□□ -0.99
DDX55-210ENST00000543016 COX8CQ7Z4L0 72 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 PRNTQ86SH4 94 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 C1orf158Q8N1D5 194 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 Q8TAT8 98 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 LINC01587Q99440 93 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 PYGO2Q9BRQ0 406 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 LINC00467Q9BRT7 94 aa8.84□□□□□ -0.99
DDX55-210ENST00000543016 TRAV21A0A0B4J279 112 aa8.83□□□□□ -1
DDX55-210ENST00000543016 SCO2A0A1W2PP80 73 aa8.83□□□□□ -1
DDX55-210ENST00000543016 RNASE4P34096 147 aaKnown RBP8.83□□□□□ -1
DDX55-210ENST00000543016 RRN3P1Q2M238 152 aa8.83□□□□□ -1
DDX55-210ENST00000543016 SMUG1Q53HV7 270 aa8.83□□□□□ -1
DDX55-210ENST00000543016 CLLU1Q5K131 121 aa8.83□□□□□ -1
DDX55-210ENST00000543016 Q6AWC8 147 aa8.83□□□□□ -1
DDX55-210ENST00000543016 ZNF493Q6ZR52 646 aa8.83□□□□□ -1
DDX55-210ENST00000543016 Q86TA4 180 aa8.83□□□□□ -1
DDX55-210ENST00000543016 SMIM12Q96EX1 92 aa8.83□□□□□ -1
DDX55-210ENST00000543016 EIF5A2Q9GZV4 153 aaKnown RBP8.83□□□□□ -1
DDX55-210ENST00000543016 RETNQ9HD89 108 aa8.83□□□□□ -1
DDX55-210ENST00000543016 MED9Q9NWA0 146 aa8.83□□□□□ -1
DDX55-210ENST00000543016 PRKDCP78527 4128 aaKnown RBP8.82□□□□□ -1
DDX55-210ENST00000543016 TRAV12-3A0A0B4J271 114 aa8.82□□□□□ -1
DDX55-210ENST00000543016 TRAV34A0A0B4J273 112 aa8.82□□□□□ -1
DDX55-210ENST00000543016 ZNF324O75467 553 aaPredicted RBP8.82□□□□□ -1
DDX55-210ENST00000543016 LTAP01374 205 aa8.82□□□□□ -1
DDX55-210ENST00000543016 IFITM2Q01629 132 aa8.82□□□□□ -1
DDX55-210ENST00000543016 PEA15Q15121 130 aa8.82□□□□□ -1
DDX55-210ENST00000543016 TMEM183AQ8IXX5 376 aa8.82□□□□□ -1
DDX55-210ENST00000543016 TVP23CQ96ET8 276 aa8.82□□□□□ -1
DDX55-210ENST00000543016 SGK494Q96LW2 274 aa8.82□□□□□ -1
DDX55-210ENST00000543016 LINC00479Q96M42 142 aa8.82□□□□□ -1
DDX55-210ENST00000543016 C11orf68Q9H3H3 251 aaKnown RBP8.82□□□□□ -1
DDX55-210ENST00000543016 X6R8D5 127 aa8.82□□□□□ -1
DDX55-210ENST00000543016 IGHV3OR16-12A0A075B7B8 117 aa8.81□□□□□ -1
DDX55-210ENST00000543016 RPL35P42766 123 aaKnown RBP8.81□□□□□ -1
DDX55-210ENST00000543016 BTN1A1Q13410 526 aa8.81□□□□□ -1
DDX55-210ENST00000543016 KIR3DS1Q14943 382 aa8.81□□□□□ -1
DDX55-210ENST00000543016 TOR2AQ5JU69 321 aa8.81□□□□□ -1
DDX55-210ENST00000543016 BAGE2Q86Y30 109 aa8.81□□□□□ -1
DDX55-210ENST00000543016 TEX48A0A1B0GUV7 120 aa8.8□□□□□ -1
DDX55-210ENST00000543016 FABP5P3A8MUU1 101 aa8.8□□□□□ -1
DDX55-210ENST00000543016 J3KRW8 73 aa8.8□□□□□ -1
DDX55-210ENST00000543016 RGS13O14921 159 aa8.8□□□□□ -1
DDX55-210ENST00000543016 GCGP01275 180 aa8.8□□□□□ -1
DDX55-210ENST00000543016 PFN1P07737 140 aaKnown RBP8.8□□□□□ -1
DDX55-210ENST00000543016 RBMY1A1P0DJD3 496 aaKnown RBP8.8□□□□□ -1
DDX55-210ENST00000543016 RBMY1CP0DJD4 496 aa8.8□□□□□ -1
DDX55-210ENST00000543016 RBMY1FQ15415 496 aaKnown RBP8.8□□□□□ -1
DDX55-210ENST00000543016 TDRG1Q3Y452 100 aa8.8□□□□□ -1
DDX55-210ENST00000543016 ANXA2RQ3ZCQ2 193 aa8.8□□□□□ -1
DDX55-210ENST00000543016 EIF4E3Q8N5X7 224 aaKnown RBP8.8□□□□□ -1
DDX55-210ENST00000543016 Q8NAQ8 132 aa8.8□□□□□ -1
DDX55-210ENST00000543016 KCNS1Q96KK3 526 aa8.8□□□□□ -1
DDX55-210ENST00000543016 BIN3Q9NQY0 253 aa8.8□□□□□ -1
DDX55-210ENST00000543016 NBEAL2Q6ZNJ1 2754 aa8.79□□□□□ -1
DDX55-210ENST00000543016 IGHV1OR15-1A0A075B7D0 117 aa8.79□□□□□ -1
DDX55-210ENST00000543016 IGHV4-28A0A0C4DH34 117 aa8.79□□□□□ -1
DDX55-210ENST00000543016 RAB19A4D1S5 217 aa8.79□□□□□ -1
DDX55-210ENST00000543016 C9JCJ5 164 aa8.79□□□□□ -1
DDX55-210ENST00000543016 GNG4P50150 75 aa8.79□□□□□ -1
DDX55-210ENST00000543016 PRR9Q5T870 116 aa8.79□□□□□ -1
DDX55-210ENST00000543016 FAM159AQ6UWV7 190 aa8.79□□□□□ -1
DDX55-210ENST00000543016 IL17DQ8TAD2 202 aa8.79□□□□□ -1
DDX55-210ENST00000543016 TMEM263Q8WUH6 116 aaKnown RBP8.79□□□□□ -1
DDX55-210ENST00000543016 PCNPQ8WW12 178 aaKnown RBP8.79□□□□□ -1
DDX55-210ENST00000543016 C16orf74Q96GX8 76 aa8.79□□□□□ -1
DDX55-210ENST00000543016 MLST8Q9BVC4 326 aa8.79□□□□□ -1
DDX55-210ENST00000543016 FAM74A3Q4VXF1 159 aa8.78□□□□□ -1
DDX55-210ENST00000543016 FAM162BQ5T6X4 162 aa8.78□□□□□ -1
DDX55-210ENST00000543016 C8orf49Q96NF6 230 aa8.78□□□□□ -1
DDX55-210ENST00000543016 EDA2RQ9HAV5 297 aa8.78□□□□□ -1
DDX55-210ENST00000543016 STAB2Q8WWQ8 2551 aa8.77□□□□□ -1
DDX55-210ENST00000543016 TRGV11A0A075B6L2 103 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 CBY3A6NI87 242 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 ZNF705GA8MUZ8 300 aaPredicted RBP8.77□□□□□ -1.01
DDX55-210ENST00000543016 SRP19P09132 144 aaKnown RBP8.77□□□□□ -1.01
DDX55-210ENST00000543016 ZNF674Q2M3X9 581 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 CENPWQ5EE01 88 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 IBA57Q5T440 356 aaKnown RBP8.77□□□□□ -1.01
DDX55-210ENST00000543016 LCE2CQ5TA81 110 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 RNASE8Q8TDE3 154 aaKnown RBP8.77□□□□□ -1.01
DDX55-210ENST00000543016 DERL1Q9BUN8 251 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 SDF2L1Q9HCN8 221 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 TP53TG3Q9ULZ0 132 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 LY96Q9Y6Y9 160 aa8.77□□□□□ -1.01
DDX55-210ENST00000543016 A0A0J9YWU9 116 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 LYRM9A8MSI8 78 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 SPART-AS1P0CW21 52 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 HTN1P15515 57 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 ZNF80P51504 273 aaPredicted RBP8.76□□□□□ -1.01
DDX55-210ENST00000543016 ZC2HC1AQ96GY0 325 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 WWC2-AS2Q96NR7 200 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 PARLQ9H300 379 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 TIMM8BQ9Y5J9 83 aaPredicted RBP8.76□□□□□ -1.01
DDX55-210ENST00000543016 DNAH9Q9NYC9 4486 aa8.76□□□□□ -1.01
DDX55-210ENST00000543016 TENM3Q9P273 2699 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms