RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 BEAN1Q3B7T3 259 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 APRG1Q8IVJ8 170 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 RPP21Q9H633 154 aaKnown RBP13.18□□□□□ -0.3
CLIP1-215ENST00000541108 COLCA2A8K830 154 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 HLA-DRB4P13762 266 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 CD33P20138 364 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 ZFAND2AQ8N6M9 145 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 URGCP-MRPS24S4R325 110 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 HLA-DRB4X5D2U9 266 aa13.18□□□□□ -0.3
CLIP1-215ENST00000541108 ZNF80P51504 273 aaPredicted RBP13.17□□□□□ -0.3
CLIP1-215ENST00000541108 TRBV24-1A0A075B6N3 115 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 SMIM27A0A1W2PRY6 76 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 FAM231BA6NCW3 169 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 A8MTW9 85 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 A8MWL6 223 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 OR11H12B2RN74 326 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 SH2D1AO60880 128 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 ODF3L2Q3SX64 289 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 TSKUQ8WUA8 353 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 BTF3L4Q96K17 158 aa13.16□□□□□ -0.3
CLIP1-215ENST00000541108 TRAV9-1A0A075B6T8 112 aa13.15□□□□□ -0.3
CLIP1-215ENST00000541108 KLLNB2CW77 178 aa13.15□□□□□ -0.3
CLIP1-215ENST00000541108 H3BMM0 161 aa13.15□□□□□ -0.3
CLIP1-215ENST00000541108 GPX1P07203 203 aa13.15□□□□□ -0.3
CLIP1-215ENST00000541108 CLUHP3Q96NS8 147 aa13.15□□□□□ -0.3
CLIP1-215ENST00000541108 PYGO2Q9BRQ0 406 aa13.15□□□□□ -0.3
CLIP1-215ENST00000541108 GFRA4Q9GZZ7 299 aa13.15□□□□□ -0.3
CLIP1-215ENST00000541108 WIPF1O43516 503 aa13.15□□□□□ -0.31
CLIP1-215ENST00000541108 TSPOP30536 169 aa13.15□□□□□ -0.31
CLIP1-215ENST00000541108 ACTL10Q5JWF8 245 aa13.15□□□□□ -0.31
CLIP1-215ENST00000541108 OR2D3Q8NGH3 330 aa13.15□□□□□ -0.31
CLIP1-215ENST00000541108 CA1P00915 261 aaPredicted RBP13.14□□□□□ -0.31
CLIP1-215ENST00000541108 LEPP41159 167 aa13.14□□□□□ -0.31
CLIP1-215ENST00000541108 FAM3BP58499 235 aaPredicted RBP13.14□□□□□ -0.31
CLIP1-215ENST00000541108 Q6AWC8 147 aa13.14□□□□□ -0.31
CLIP1-215ENST00000541108 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.14□□□□□ -0.31
CLIP1-215ENST00000541108 SPATA3Q8NHX4 192 aa13.14□□□□□ -0.31
CLIP1-215ENST00000541108 XKRY2A2RUG3 117 aa13.13□□□□□ -0.31
CLIP1-215ENST00000541108 KNCNA6PVL3 124 aa13.13□□□□□ -0.31
CLIP1-215ENST00000541108 CDKN1BP46527 198 aa13.13□□□□□ -0.31
CLIP1-215ENST00000541108 AMTNQ6UX39 209 aa13.13□□□□□ -0.31
CLIP1-215ENST00000541108 TRAV21A0A0B4J279 112 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 A0A1W2PPQ1 181 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 TMEM189A5PLL7 270 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 FOXA3P55318 350 aaPredicted RBP13.12□□□□□ -0.31
CLIP1-215ENST00000541108 RPS20P60866 119 aaKnown RBP13.12□□□□□ -0.31
CLIP1-215ENST00000541108 LINC01559Q495D7 138 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 NAT8BQ9UHF3 227 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 AGRNO00468 2067 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 VWFP04275 2813 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 TGIF2-C20orf24A0A0A6YYL0 155 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 CXCL1P09341 107 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 RPL19P84098 196 aaKnown RBP13.12□□□□□ -0.31
CLIP1-215ENST00000541108 PRR9Q5T870 116 aa13.12□□□□□ -0.31
CLIP1-215ENST00000541108 ZNF124Q15973 351 aa13.11□□□□□ -0.31
CLIP1-215ENST00000541108 FAM210BQ96KR6 192 aa13.11□□□□□ -0.31
CLIP1-215ENST00000541108 NEU1Q99519 415 aa13.11□□□□□ -0.31
CLIP1-215ENST00000541108 C19orf73Q9NVV2 129 aa13.11□□□□□ -0.31
CLIP1-215ENST00000541108 HIGD1CA8MV81 97 aa13.1□□□□□ -0.31
CLIP1-215ENST00000541108 IGKV3-20P01619 116 aa13.1□□□□□ -0.31
CLIP1-215ENST00000541108 ORM1P02763 201 aa13.1□□□□□ -0.31
CLIP1-215ENST00000541108 CD7P09564 240 aa13.1□□□□□ -0.31
CLIP1-215ENST00000541108 RAB5AP20339 215 aa13.1□□□□□ -0.31
CLIP1-215ENST00000541108 RNASE4P34096 147 aaKnown RBP13.1□□□□□ -0.31
CLIP1-215ENST00000541108 TYMSP04818 313 aa13.09□□□□□ -0.31
CLIP1-215ENST00000541108 STHQ8IWL8 128 aa13.09□□□□□ -0.31
CLIP1-215ENST00000541108 NUP35Q8NFH5 326 aa13.09□□□□□ -0.31
CLIP1-215ENST00000541108 GTSF1Q8WW33 167 aa13.09□□□□□ -0.31
CLIP1-215ENST00000541108 COL6A5A8TX70 2615 aa13.09□□□□□ -0.31
CLIP1-215ENST00000541108 C7orf71A4D174 169 aa13.08□□□□□ -0.31
CLIP1-215ENST00000541108 J3KRW8 73 aa13.08□□□□□ -0.31
CLIP1-215ENST00000541108 KIR3DS1Q14943 382 aa13.08□□□□□ -0.31
CLIP1-215ENST00000541108 STAB1Q9NY15 2570 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 NOTCH3Q9UM47 2321 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 IGKV3D-20A0A0C4DH25 116 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 M0R2Z0 102 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 IGLL1P15814 213 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 TCL1AP56279 114 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 SPINK13Q1W4C9 94 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 TRPT1Q86TN4 253 aaKnown RBP13.08□□□□□ -0.32
CLIP1-215ENST00000541108 GTSCR1Q86UQ5 136 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 ZNF575Q86XF7 245 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 C11orf21Q9P2W6 132 aa13.08□□□□□ -0.32
CLIP1-215ENST00000541108 ZNF324O75467 553 aaPredicted RBP13.07□□□□□ -0.32
CLIP1-215ENST00000541108 RBMY1BA6NDE4 496 aaKnown RBP13.06□□□□□ -0.32
CLIP1-215ENST00000541108 RBMY1EA6NEQ0 496 aaKnown RBP13.06□□□□□ -0.32
CLIP1-215ENST00000541108 RBMY1DP0C7P1 496 aaKnown RBP13.06□□□□□ -0.32
CLIP1-215ENST00000541108 NUTF2P61970 127 aaKnown RBP13.06□□□□□ -0.32
CLIP1-215ENST00000541108 GFI1BQ5VTD9 330 aa13.06□□□□□ -0.32
CLIP1-215ENST00000541108 SRD5A3Q9H8P0 318 aa13.06□□□□□ -0.32
CLIP1-215ENST00000541108 AMBPP02760 352 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 GZMBP10144 247 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 COX19Q49B96 90 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 PRR31Q5SQ13 230 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 RASL11AQ6T310 242 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 Q6ZQT7 251 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 ATP5L2Q7Z4Y8 100 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 TRAV12-2A0A075B6T6 113 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 TMSB15BA0A087X1C1 80 aa13.05□□□□□ -0.32
CLIP1-215ENST00000541108 TRAV12-3A0A0B4J271 114 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms