RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF22P17026 224 aaPredicted RBP7.38□□□□□ -1.23
CLIP1-214ENST00000540539 ZNF134P52741 427 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 TMEM258P61165 79 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 TMEM86BQ8N661 226 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 PLEKHB2Q96CS7 222 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 RPUSD1Q9UJJ7 312 aaKnown RBP7.38□□□□□ -1.23
CLIP1-214ENST00000540539 V9GYY9 64 aa7.38□□□□□ -1.23
CLIP1-214ENST00000540539 TNCP24821 2201 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 TRAV17A0A0B4J275 112 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 LINC01546A6NGU7 62 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 K7ENP7 123 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 COX6A1P12074 109 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 LIFP15018 202 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 PLNP26678 52 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 PCOLCEQ15113 449 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 LINC01620Q4KN68 170 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 C10orf113Q5VZT2 155 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 PATE2Q6UY27 113 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 EXOC3-AS1Q8N2X6 119 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 NFAM1Q8NET5 270 aaPredicted RBP7.37□□□□□ -1.23
CLIP1-214ENST00000540539 FOXA2Q9Y261 457 aaPredicted RBP7.37□□□□□ -1.23
CLIP1-214ENST00000540539 DOCK10Q96BY6 2186 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 DMXL2Q8TDJ6 3036 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 MED13Q9UHV7 2174 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 IGHV1-45A0A0A0MS14 117 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 C15orf61A6NNL5 157 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 TRACP01848 142 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 ZNF415Q09FC8 603 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 RNF152Q8N8N0 203 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 ZNF714Q96N38 554 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 URB1O60287 2271 aaKnown RBP7.37□□□□□ -1.23
CLIP1-214ENST00000540539 DSCAML1Q8TD84 2053 aa7.37□□□□□ -1.23
CLIP1-214ENST00000540539 IGF2RP11717 2491 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 PROP1O75360 226 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 ATP5G1P05496 136 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 ELANEP08246 267 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 HLA-DMBP28068 263 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 SCGB1D4Q6XE38 83 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 NXT2Q9NPJ8 142 aaKnown RBP7.36□□□□□ -1.23
CLIP1-214ENST00000540539 ZNF256Q9Y2P7 627 aaPredicted RBP7.36□□□□□ -1.23
CLIP1-214ENST00000540539 CHD8Q9HCK8 2581 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 ZNF815PA8K554 130 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 IGHV3-13P01766 116 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 PRNTQ86SH4 94 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 IMMP1LQ96LU5 166 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 PRO1854Q9UHT4 67 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 CFAP47Q6ZTR5 3102 aa7.36□□□□□ -1.23
CLIP1-214ENST00000540539 ZFHX4Q86UP3 3567 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 ANKRD11Q6UB99 2663 aaPredicted RBP7.35□□□□□ -1.23
CLIP1-214ENST00000540539 IGHV3-43A0A0B4J1X8 118 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 DEFB108AA8MXU0 73 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 H3BTX0 84 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 NGFP01138 241 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 IGLV2-11P01706 119 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 IGHV3-43DP0DP04 118 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 SLC25A16P16260 332 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 FKBP2P26885 142 aaKnown RBP7.35□□□□□ -1.23
CLIP1-214ENST00000540539 TRAV41A0A0B4J266 112 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 TRBV10-2A0A0K0K1G8 114 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 GAS8-AS1O95177 125 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 LYZL1Q6UWQ5 148 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 Q8N8P6 123 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 RNF125Q96EQ8 232 aa7.35□□□□□ -1.23
CLIP1-214ENST00000540539 PFN2P35080 140 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 HERVK_113P61574 105 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 FAM27E3Q08E93 113 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 ATP1A1-AS1Q5TC04 95 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 SPANXDQ9BXN6 97 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 PRDM14Q9GZV8 571 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 TMEM14BQ9NUH8 114 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 LOC400499M0QZD8 3231 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 WT1P19544 449 aaPredicted RBP7.34□□□□□ -1.23
CLIP1-214ENST00000540539 SSR4P51571 173 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 RPS19BP1Q86WX3 136 aaKnown RBP7.34□□□□□ -1.23
CLIP1-214ENST00000540539 DEFB126Q9BYW3 111 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 Q9H3A6 140 aa7.34□□□□□ -1.23
CLIP1-214ENST00000540539 J3QQQ9 107 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 Q0VFX4 171 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 ATXN8Q156A1 80 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 LINC00305Q7Z4B0 112 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 CTSZQ9UBR2 303 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 A0A096LPE4 126 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 FAM236DA0A1B0GTK5 79 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 A0A1W2PPZ6 126 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 TMEM30CPA0ZSE6 113 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 LY6LH3BQJ8 138 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 IGHV4-39P01824 125 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 P0DMU3 169 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 FAM231AP0DMU4 169 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 FAM231CP0DMU5 169 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 FAM236CP0DP71 79 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 PRDX2P32119 198 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 VKORC1Q9BQB6 163 aa7.33□□□□□ -1.24
CLIP1-214ENST00000540539 LAMA5O15230 3695 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 TRAV13-1A0A0B4J241 112 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 F8VRH5 84 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 PSPNO60542 156 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 COX6B1P14854 86 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 CRIP1P50238 77 aa7.32□□□□□ -1.24
CLIP1-214ENST00000540539 CD69Q07108 199 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms