RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 RBP4P02753 201 aa10.96□□□□□ -0.65
LIG1-203ENST00000536218 CKS2P33552 79 aa10.96□□□□□ -0.65
LIG1-203ENST00000536218 KLF17Q5JT82 389 aaPredicted RBP10.96□□□□□ -0.65
LIG1-203ENST00000536218 RAB1BQ9H0U4 201 aa10.96□□□□□ -0.65
LIG1-203ENST00000536218 CSMD1Q96PZ7 3565 aa10.96□□□□□ -0.65
LIG1-203ENST00000536218 WI2-2373I1.2A0A1W2PRP0 233 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 GAGE12JA6NER3 117 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 GAGE7O76087 117 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 GAGE12FP0CL80 117 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 GAGE12GP0CL81 117 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 GAGE12IP0CL82 117 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 GAGE4Q13068 117 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 C2orf83Q53S99 150 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 HCP5Q6MZN7 132 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 Q86TA4 180 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 HHLA3Q9XRX5 114 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 IGHV3-21A0A0B4J1V1 117 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 ID1P41134 155 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 WT1-ASQ06250 92 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 EXOC3-AS1Q8N2X6 119 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 NDUFA4L2Q9NRX3 87 aa10.96□□□□□ -0.66
LIG1-203ENST00000536218 SPG11Q96JI7 2443 aa10.95□□□□□ -0.66
LIG1-203ENST00000536218 IL4P05112 153 aa10.95□□□□□ -0.66
LIG1-203ENST00000536218 NHLRC4P0CG21 123 aaPredicted RBP10.95□□□□□ -0.66
LIG1-203ENST00000536218 CFAP126Q5VTH2 177 aa10.95□□□□□ -0.66
LIG1-203ENST00000536218 LINC00311Q8N616 119 aa10.95□□□□□ -0.66
LIG1-203ENST00000536218 NPYP01303 97 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 IGLV2-23P01705 113 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 LEPP41159 167 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 ODF1Q14990 250 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 VMA21Q3ZAQ7 101 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 DLX4Q92988 240 aaPredicted RBP10.94□□□□□ -0.66
LIG1-203ENST00000536218 CACNA1BQ00975 2339 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 TRAV40A0A0B4J280 105 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 TMEM8BA6NDV4 472 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 TMEM167AQ8TBQ9 72 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 MRPL36Q9P0J6 103 aaKnown RBP10.94□□□□□ -0.66
LIG1-203ENST00000536218 ACACBO00763 2458 aa10.94□□□□□ -0.66
LIG1-203ENST00000536218 A0A1W2PPR1 153 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 CGB1A6NKQ9 187 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 PPDPFLQ8WWR9 84 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 RPEQ96AT9 228 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 CARD19Q96LW7 228 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 HOXA3O43365 443 aaPredicted RBP10.93□□□□□ -0.66
LIG1-203ENST00000536218 PRTN3P24158 256 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 GAGE2BQ13066 116 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 MRPL51Q4U2R6 128 aaKnown RBP10.93□□□□□ -0.66
LIG1-203ENST00000536218 GAGE2EQ4V326 116 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 TTC32Q5I0X7 151 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 GAGE2DQ9UEU5 116 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 LYZL1Q6UWQ5 148 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 ZFP2Q6ZN57 461 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 TIMD4Q96H15 378 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 CITED1Q99966 193 aa10.93□□□□□ -0.66
LIG1-203ENST00000536218 BUB1B-PAK6H3BSN5 160 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 DPM2O94777 84 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 FAM104BQ5XKR9 115 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 ATP6V0E2Q8NHE4 81 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 IGHV1-3A0A0C4DH29 117 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 A0A1W2PPI3 338 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 IGLV1-47P01700 117 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 C3orf56Q8N813 242 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 FBXL15Q9H469 300 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 UBTD1Q9HAC8 227 aa10.92□□□□□ -0.66
LIG1-203ENST00000536218 GNLYP22749 145 aa10.91□□□□□ -0.66
LIG1-203ENST00000536218 PLGLAQ15195 96 aa10.91□□□□□ -0.66
LIG1-203ENST00000536218 TNFRSF18Q9Y5U5 241 aa10.91□□□□□ -0.66
LIG1-203ENST00000536218 FABP5P3A8MUU1 101 aa10.91□□□□□ -0.66
LIG1-203ENST00000536218 FSTL3O95633 263 aa10.91□□□□□ -0.66
LIG1-203ENST00000536218 LINC01549A6NIU2 74 aa10.91□□□□□ -0.66
LIG1-203ENST00000536218 OVOL3O00110 214 aa10.91□□□□□ -0.66
LIG1-203ENST00000536218 NDUFV3P56181 108 aaKnown RBP10.91□□□□□ -0.66
LIG1-203ENST00000536218 ZFYVE26Q68DK2 2539 aa10.9□□□□□ -0.66
LIG1-203ENST00000536218 NDUFA3O95167 84 aa10.9□□□□□ -0.66
LIG1-203ENST00000536218 ZNF688P0C7X2 276 aa10.9□□□□□ -0.66
LIG1-203ENST00000536218 EVI2AP22794 236 aa10.9□□□□□ -0.66
LIG1-203ENST00000536218 MORN3Q6PF18 240 aaPredicted RBP10.9□□□□□ -0.66
LIG1-203ENST00000536218 C8orf31Q8N9H6 132 aa10.9□□□□□ -0.66
LIG1-203ENST00000536218 IGKV1D-37A0A075B6S9 117 aa10.9□□□□□ -0.66
LIG1-203ENST00000536218 SRSF1Q07955 248 aaKnown RBP eCLIP10.9□□□□□ -0.663e-6■■■■□ 20.3
LIG1-203ENST00000536218 AJUBAQ96IF1 538 aa10.9□□□□□ -0.66
LIG1-203ENST00000536218 SNCGO76070 127 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 TWIST1Q15672 202 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 RUSC1-AS1Q66K80 236 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 TEN1Q86WV5 123 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 YAE1D1Q9NRH1 226 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 MRPL35Q9NZE8 188 aaKnown RBP10.89□□□□□ -0.67
LIG1-203ENST00000536218 CACNA1AO00555 2505 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 RPL27AP46776 148 aaKnown RBP10.89□□□□□ -0.67
LIG1-203ENST00000536218 SUB1P53999 127 aaKnown RBP eCLIP10.89□□□□□ -0.671e-16■■■■■ 45.6
LIG1-203ENST00000536218 PRORYQ9H606 182 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 ZNF785A8K8V0 405 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 TIMM23O14925 209 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 FAM159AQ6UWV7 190 aa10.89□□□□□ -0.67
LIG1-203ENST00000536218 NCBP2LA6PVI3 153 aaKnown RBP10.88□□□□□ -0.67
LIG1-203ENST00000536218 HES1Q14469 280 aa10.88□□□□□ -0.67
LIG1-203ENST00000536218 MRGPRG-AS1Q2M3A8 158 aa10.88□□□□□ -0.67
LIG1-203ENST00000536218 SIGLEC9Q9Y336 463 aa10.88□□□□□ -0.67
LIG1-203ENST00000536218 C11orf71Q6IPW1 123 aa10.88□□□□□ -0.67
LIG1-203ENST00000536218 TRAV8-2A0A0B4J237 113 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms