RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	AAMDC	Q9H7C9	122 aa		10.85	□□□□□ -0.67
CPSF1-208	ENST00000532560	IGHV3OR16-12	A0A075B7B8	117 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	ZNF727	A8MUV8	499 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	NPIPB6	E9PJ23	425 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560		M0R3E3	92 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	CEBPG	P53567	150 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	UBE2L3	P68036	154 aa	Known RBP	10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	ELOB	Q15370	118 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	EXOC3-AS1	Q8N2X6	119 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	BTF3L4	Q96K17	158 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	PPP1R14D	Q9NXH3	145 aa		10.84	□□□□□ -0.67
CPSF1-208	ENST00000532560	STARD9	Q9P2P6	4700 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560		A0A1W2PPV4	95 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	TMEM189	A5PLL7	270 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	PDE6D	O43924	150 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	RPL35	P42766	123 aa	Known RBP	10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	CDKN1B	P46527	198 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	CDC34	P49427	236 aa	Predicted RBP	10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	NANOS2	P60321	138 aa	Known RBP	10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	TMEM241	Q24JQ0	296 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	PQLC2	Q6ZP29	291 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	ZFP82	Q8N141	532 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	C2CD4C	Q8TF44	421 aa		10.83	□□□□□ -0.68
CPSF1-208	ENST00000532560	TRBV24-1	A0A075B6N3	115 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	TRAV12-2	A0A075B6T6	113 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560		F6UZH7	168 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	TSPO	P30536	169 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	SNRPE	P62304	92 aa	Known RBP	10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	SSX7	Q7RTT5	188 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	LYPD1	Q8N2G4	141 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	TMEM256	Q8N2U0	113 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	RAB24	Q969Q5	203 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	C12orf57	Q99622	126 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	SMIM7	Q9BQ49	75 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	TMEM208	Q9BTX3	173 aa		10.82	□□□□□ -0.68
CPSF1-208	ENST00000532560	RPS10	P46783	165 aa	Known RBP	10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560	FGF8	P55075	233 aa	Predicted RBP	10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560	CEMP1	Q6PRD7	247 aa	Predicted RBP	10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560	PHLDA1	Q8WV24	401 aa	Predicted RBP	10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560	ANAPC16	Q96DE5	110 aa		10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560	C20orf144	Q9BQM9	153 aa		10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560		Q9H3A6	140 aa		10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560	ARL2-SNX15	V9GYD0	113 aa		10.81	□□□□□ -0.68
CPSF1-208	ENST00000532560	EIF3G	O75821	320 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	CT45A10	P0DMU9	189 aa		10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	S100P	P25815	95 aa		10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	LEP	P41159	167 aa		10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	RRN3P1	Q2M238	152 aa		10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	IQCF2	Q8IXL9	164 aa		10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	TMPRSS5	Q9H3S3	457 aa		10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	CELA1	Q9UNI1	258 aa		10.8	□□□□□ -0.68
CPSF1-208	ENST00000532560	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	IGKV2D-40	P01614	121 aa	Predicted RBP	10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	STAG3L2	P0CL84	134 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	STAG3L3	P0CL85	134 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	ARL14EPL	P0DKL9	152 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	RAN	P62826	216 aa	Known RBP	10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	FABP9	Q0Z7S8	132 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	ZNF674	Q2M3X9	581 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	C9orf47	Q6ZRZ4	202 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	FAM210B	Q96KR6	192 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	LINC00477	Q96M19	166 aa		10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	KLK5	Q9Y337	293 aa	Predicted RBP	10.79	□□□□□ -0.68
CPSF1-208	ENST00000532560	TEX48	A0A1B0GUV7	120 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	C11orf94	C9JXX5	98 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	PPP1R2P9	O14990	202 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	HMGB3	O15347	200 aa	Known RBP	10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	CXorf1	O96002	111 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	HOXA5	P20719	270 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	CSN1S1	P47710	185 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	ERCC8	Q13216	396 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	KIR3DS1	Q14943	382 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	GFI1B	Q5VTD9	330 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	FAM19A4	Q96LR4	140 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	AGPAT4-IT1	Q9H0P7	198 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	OTOR	Q9NRC9	128 aa		10.78	□□□□□ -0.68
CPSF1-208	ENST00000532560	LCE6A	A0A183	80 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	RBAKDN	A6NC62	111 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560		H7BYZ3	331 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	SLC25A5	P05141	298 aa	Known RBP	10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	SPART-AS1	P0CW21	52 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	TAS2R60	P59551	318 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	TMEM78	Q5T7P6	136 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560		Q6ZTC4	211 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	IMMP2L	Q96T52	175 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	LINC01587	Q99440	93 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	PYGO2	Q9BRQ0	406 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	PARL	Q9H300	379 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	DKK2	Q9UBU2	259 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	TENM2	Q9NT68	2774 aa		10.77	□□□□□ -0.69
CPSF1-208	ENST00000532560	DYNC2H1	Q8NCM8	4307 aa	Known RBP	10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	ZNF705G	A8MUZ8	300 aa	Predicted RBP	10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	KLLN	B2CW77	178 aa		10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	CRISP2	P16562	243 aa		10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	GCHFR	P30047	84 aa		10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	EMP1	P54849	157 aa		10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	RPL23	P62829	140 aa	Known RBP	10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	ADIRF	Q15847	76 aa		10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	C12orf74	Q32Q52	190 aa		10.76	□□□□□ -0.69
CPSF1-208	ENST00000532560	ARL6IP6	Q8N6S5	226 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 55 ms