RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 IFNA5P01569 189 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 UBE2L3P68036 154 aaKnown RBP10.15□□□□□ -0.78
VPS28-215ENST00000531924 MUC21Q5SSG8 566 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 PRR9Q5T870 116 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 PHYHIPLQ96FC7 376 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 C8orf49Q96NF6 230 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 HHLA3Q9XRX5 114 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 HSPG2P98160 4391 aa10.15□□□□□ -0.78
VPS28-215ENST00000531924 TRGV4A0A0C4DH28 118 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 INMT-MINDY4F8WBC2 141 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 SSNA1O43805 119 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 UPK1BO75841 260 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 NXPH4O95158 308 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 PET100P0DJ07 73 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 LINC00315P59091 139 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 TAS2R45P59539 299 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 MRPL23Q16540 153 aaKnown RBP10.14□□□□□ -0.79
VPS28-215ENST00000531924 FFAR4Q5NUL3 377 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 LYPD1Q8N2G4 141 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 PCNPQ8WW12 178 aaKnown RBP10.14□□□□□ -0.79
VPS28-215ENST00000531924 ATP5SQ99766 215 aa10.14□□□□□ -0.79
VPS28-215ENST00000531924 TRAV9-2A0A087WT02 112 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 RBAKDNA6NC62 111 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 ZNF266Q14584 549 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 KHDC3LQ587J8 217 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 FAM159AQ6UWV7 190 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 CMTM2Q8TAZ6 248 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 PPP1R1CQ8WVI7 109 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 HYLS1Q96M11 299 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 KRTAP4-5Q9BYR2 181 aa10.13□□□□□ -0.79
VPS28-215ENST00000531924 H0YIZ8 118 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 CRYBA4P53673 196 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 FAM74A1Q5RGS3 127 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 Q6ZQT7 251 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 NEGR1Q7Z3B1 354 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 SMIM3Q9BZL3 60 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 PTTG2Q9NZH5 202 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 NAGKQ9UJ70 344 aa10.12□□□□□ -0.79
VPS28-215ENST00000531924 TRGV11A0A075B6L2 103 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 SRIP30626 198 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 KRTAP10-2P60368 255 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 FHL2Q14192 279 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 TMEM183BQ1AE95 376 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 LYPD5Q6UWN5 251 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 TMEM183AQ8IXX5 376 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 SPXQ9BT56 116 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 RPH3ALQ9UNE2 315 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 HSPB11Q9Y547 144 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 LRP1BQ9NZR2 4599 aa10.11□□□□□ -0.79
VPS28-215ENST00000531924 DIRC3C9JPN6 131 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 RPL12P30050 165 aaKnown RBP10.1□□□□□ -0.79
VPS28-215ENST00000531924 H2BFSP57053 126 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 DEFA1P59665 94 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 DEFA3P59666 94 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 ERVFC1-1P60608 527 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 NFE4Q86UQ8 179 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 SCRT2Q9NQ03 307 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 MDFICQ9P1T7 246 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 LENEPQ9Y5L5 61 aa10.1□□□□□ -0.79
VPS28-215ENST00000531924 A0A1W2PPV4 95 aa10.09□□□□□ -0.79
VPS28-215ENST00000531924 MPC2O95563 127 aa10.09□□□□□ -0.79
VPS28-215ENST00000531924 OTORQ9NRC9 128 aa10.09□□□□□ -0.79
VPS28-215ENST00000531924 PGPEP1Q9NXJ5 209 aa10.09□□□□□ -0.79
VPS28-215ENST00000531924 MBD2Q9UBB5 411 aa10.09□□□□□ -0.79
VPS28-215ENST00000531924 LY96Q9Y6Y9 160 aa10.09□□□□□ -0.79
VPS28-215ENST00000531924 PGPA6NDG6 321 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 ORM1P02763 201 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 SFTA3P0C7M3 94 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 GYPEP15421 78 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 EVI2AP22794 236 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 ACOT6Q3I5F7 207 aaPredicted RBP10.08□□□□□ -0.8
VPS28-215ENST00000531924 Q6AWC8 147 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 Q8N1X5 172 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 ZNF479Q96JC4 524 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 TXNDC17Q9BRA2 123 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 MARVELD1Q9BSK0 173 aa10.08□□□□□ -0.8
VPS28-215ENST00000531924 C9JCJ5 164 aa10.07□□□□□ -0.8
VPS28-215ENST00000531924 IQCF2Q8IXL9 164 aa10.07□□□□□ -0.8
VPS28-215ENST00000531924 OR4C5Q8NGB2 326 aa10.07□□□□□ -0.8
VPS28-215ENST00000531924 OR10G4Q8NGN3 311 aa10.07□□□□□ -0.8
VPS28-215ENST00000531924 TMED6Q8WW62 240 aa10.07□□□□□ -0.8
VPS28-215ENST00000531924 RASL10AQ92737 203 aa10.07□□□□□ -0.8
VPS28-215ENST00000531924 TRAV21A0A0B4J279 112 aa10.06□□□□□ -0.8
VPS28-215ENST00000531924 K7EQD1 137 aa10.06□□□□□ -0.8
VPS28-215ENST00000531924 EIF3GO75821 320 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS28-215ENST00000531924 IFITM3Q01628 133 aa10.06□□□□□ -0.8
VPS28-215ENST00000531924 PQLC2Q6ZP29 291 aa10.06□□□□□ -0.8
VPS28-215ENST00000531924 Q6ZRN7 208 aaPredicted RBP10.06□□□□□ -0.8
VPS28-215ENST00000531924 GOLT1AQ6ZVE7 132 aa10.06□□□□□ -0.8
VPS28-215ENST00000531924 TRAV4A0A0B4J268 109 aa10.05□□□□□ -0.8
VPS28-215ENST00000531924 K7EP13 123 aa10.05□□□□□ -0.8
VPS28-215ENST00000531924 M0R2P5 195 aa10.05□□□□□ -0.8
VPS28-215ENST00000531924 NDFIP1Q9BT67 221 aa10.05□□□□□ -0.8
VPS28-215ENST00000531924 SDF2L1Q9HCN8 221 aa10.05□□□□□ -0.8
VPS28-215ENST00000531924 TREM1Q9NP99 234 aa10.05□□□□□ -0.8
VPS28-215ENST00000531924 TNFRSF18Q9Y5U5 241 aa10.05□□□□□ -0.8
VPS28-215ENST00000531924 APOBP04114 4563 aaKnown RBP10.04□□□□□ -0.8
VPS28-215ENST00000531924 GNRH2O43555 120 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 TDRG1Q3Y452 100 aa10.04□□□□□ -0.8
VPS28-215ENST00000531924 CDPF1Q6NVV7 123 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms