RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 SIGLEC15Q6ZMC9 328 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 FOXI2Q6ZQN5 318 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 SHANK2-AS3Q9BTD1 123 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 CEP295Q9C0D2 2601 aa7.56□□□□□ -1.2
VCAN-210ENST00000513960 GLMPQ8WWB7 406 aa7.55□□□□□ -1.2
VCAN-210ENST00000513960 PTPRQQ9UMZ3 2332 aa7.55□□□□□ -1.2
VCAN-210ENST00000513960 SPRY2O43597 315 aa7.55□□□□□ -1.2
VCAN-210ENST00000513960 IGLV1-47P01700 117 aa7.55□□□□□ -1.2
VCAN-210ENST00000513960 ODF1Q14990 250 aa7.55□□□□□ -1.2
VCAN-210ENST00000513960 PTH2Q96A98 100 aa7.55□□□□□ -1.2
VCAN-210ENST00000513960 CCL21O00585 134 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 HOXA3O43365 443 aaPredicted RBP7.54□□□□□ -1.2
VCAN-210ENST00000513960 IGKV1-17P01599 117 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 MGPP08493 103 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 RPL7P18124 248 aaKnown RBP7.54□□□□□ -1.2
VCAN-210ENST00000513960 EMP1P54849 157 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 ANXA2RQ3ZCQ2 193 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 MAPKAPK5-AS1Q8N8E1 139 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 ATP5LO75964 103 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 MRAP2Q96G30 205 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 NXT2Q9NPJ8 142 aaKnown RBP7.54□□□□□ -1.2
VCAN-210ENST00000513960 AGRNO00468 2067 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 CRYGCP07315 174 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 ZNF672Q499Z4 452 aaPredicted RBP7.54□□□□□ -1.2
VCAN-210ENST00000513960 TIMD4Q96H15 378 aa7.54□□□□□ -1.2
VCAN-210ENST00000513960 ANKHD1Q8IWZ3 2542 aaKnown RBP7.54□□□□□ -1.2
VCAN-210ENST00000513960 ZNF562Q6V9R5 426 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 SS18L2Q9UHA2 77 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 RAXQ9Y2V3 346 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 ADGRG4Q8IZF6 3080 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 ATMQ13315 3056 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 LINC01549A6NIU2 74 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 S100A4P26447 101 aaKnown RBP7.53□□□□□ -1.2
VCAN-210ENST00000513960 ANAPC13Q9BS18 74 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 RAB1BQ9H0U4 201 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 Q1RN00 199 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 PRR25Q96S07 402 aa7.53□□□□□ -1.2
VCAN-210ENST00000513960 M0R381 172 aa7.52□□□□□ -1.2
VCAN-210ENST00000513960 GRNP28799 593 aaKnown RBP7.52□□□□□ -1.2
VCAN-210ENST00000513960 ZNF80P51504 273 aaPredicted RBP7.52□□□□□ -1.2
VCAN-210ENST00000513960 MRGPRG-AS1Q2M3A8 158 aa7.52□□□□□ -1.2
VCAN-210ENST00000513960 RNF182Q8N6D2 247 aa7.52□□□□□ -1.2
VCAN-210ENST00000513960 SCGB3A1Q96QR1 104 aa7.52□□□□□ -1.2
VCAN-210ENST00000513960 ZNF815PA8K554 130 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 H3BRN7 92 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 RRN3P1Q2M238 152 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 ZNF491Q8N8L2 437 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 TMEM14CQ9P0S9 112 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 IGKV3-7A0A075B6H7 116 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 FABP5P3A8MUU1 101 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 CRYGBP07316 175 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 SCGB1A1P11684 91 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 HLA-DRB4P13762 266 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 HLA-DRB4X5D2U9 266 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 PRTN3P24158 256 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 MFAP4P55083 255 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 RNF5Q99942 180 aa7.52□□□□□ -1.21
VCAN-210ENST00000513960 DMXL2Q8TDJ6 3036 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 WI2-2373I1.2A0A1W2PRP0 233 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 E9PLD3 99 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 TIMM23O14925 209 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 MT-ATP8P03928 68 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 DTX2Q86UW9 622 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 TEX22C9J3V5 150 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 TRGV3P03979 118 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 LAGE3Q14657 143 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 PVRIGQ6DKI7 326 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 UBTD1Q9HAC8 227 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 BEX4Q9NWD9 120 aaPredicted RBP7.51□□□□□ -1.21
VCAN-210ENST00000513960 DPM3Q9P2X0 92 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 LY6HO94772 140 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 ZNF493Q6ZR52 646 aa7.51□□□□□ -1.21
VCAN-210ENST00000513960 DLX4Q92988 240 aaPredicted RBP7.51□□□□□ -1.21
VCAN-210ENST00000513960 RPL11P62913 178 aaKnown RBP7.5□□□□□ -1.21
VCAN-210ENST00000513960 C8orf86Q6ZUL3 223 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 TMEM238LA0A1B0GVL6 79 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 A6NJY4 79 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 I3L2K1 104 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 ECSCRQ19T08 205 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 FBXL19-AS1Q494R0 122 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 IL17RELQ6ZVW7 336 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 C21orf62Q9NYP8 219 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 HIGD1BQ9P298 99 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 NOTCH3Q9UM47 2321 aa7.5□□□□□ -1.21
VCAN-210ENST00000513960 SMG1Q96Q15 3661 aaKnown RBP7.49□□□□□ -1.21
VCAN-210ENST00000513960 UCNP55089 124 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 C1orf122Q6ZSJ8 110 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 SMPXQ9UHP9 88 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 K7EIM0 57 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 NBR2O15453 112 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 TMEM78Q5T7P6 136 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 ZNF48Q96MX3 618 aaPredicted RBP7.49□□□□□ -1.21
VCAN-210ENST00000513960 HHLA3Q9XRX5 114 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 DCHS1Q96JQ0 3298 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 KLRB1Q12918 225 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 FOXI1Q12951 378 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 LYPD1Q8N2G4 141 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 RNF183Q96D59 192 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 MSRB2Q9Y3D2 182 aa7.49□□□□□ -1.21
VCAN-210ENST00000513960 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.48□□□□□ -1.214e-13■■■■□ 26.6
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms