RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 IGKV1-6A0A0C4DH72 117 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 C22orf46C9J442 243 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 ALPK2Q86TB3 2170 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 H3BUX3 64 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 C20orf197Q8N268 126 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 Q8TCH9 128 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 LRRK1Q38SD2 2015 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 SPTA1P02549 2419 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 TRAV26-2A0A0B4J265 109 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 GATA4P43694 442 aa8.9□□□□□ -0.98
LIMCH1-217ENST00000512946 IGKV1-16P04430 117 aa8.9□□□□□ -0.99
LIMCH1-217ENST00000512946 SPINK13Q1W4C9 94 aa8.9□□□□□ -0.99
LIMCH1-217ENST00000512946 TRIOBPQ9H2D6 2365 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 SERP2Q8N6R1 65 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 DOCK1Q14185 1865 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 SMIM26A0A096LP01 95 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 UBE2E1P51965 193 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 CDPF1Q6NVV7 123 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 RPL35AP18077 110 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 C16orf54Q6UWD8 224 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 TRBV6-1A0A0K0K1D8 114 aa8.89□□□□□ -0.99
LIMCH1-217ENST00000512946 APOC4P55056 127 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 FOXE3Q13461 319 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 DEFB104AQ8WTQ1 72 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 UPK3BQ9BT76 320 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 FOCADQ5VW36 1801 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 IGHV1-69P01742 117 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 DAZ2Q13117 558 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 DAZ4Q86SG3 579 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 DAZ3Q9NR90 486 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 PTPRFP10586 1907 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 TFF2Q03403 129 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 TRIP12Q14669 1992 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 F5H768 121 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 FLVCR1-AS1Q8TAF5 88 aa8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 MRPL36Q9P0J6 103 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-217ENST00000512946 EFNA2O43921 213 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 ANGP03950 147 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 LTBRP36941 435 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 C1orf147Q96MC9 270 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 TRAV12-2A0A075B6T6 113 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 IGKV1-39P01597 117 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 IGKV1D-39P04432 117 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 NDUFA11Q86Y39 141 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 ITGB4P16144 1822 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 ETV2O00321 342 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 LECT2O14960 151 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 TOMM6Q96B49 74 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 LINC01619G3V211 115 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 BPY2O14599 106 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 KLHL30-AS1Q8NEE0 82 aa8.87□□□□□ -0.99
LIMCH1-217ENST00000512946 DIRC1Q969H9 104 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 IGLC6P0CF74 106 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 Q6Q795 121 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 Q6ZS92 163 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 IGHV1-58A0A0C4DH39 117 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 TFF1P04155 84 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 TM2D2Q9BX73 214 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 CACNA1IQ9P0X4 2223 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 DOPEY2Q9Y3R5 2298 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 COX7A2LO14548 114 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 PRB3Q04118 309 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 HIST2H2BCQ6DN03 193 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 GTSF1Q8WW33 167 aa8.86□□□□□ -0.99
LIMCH1-217ENST00000512946 XCL2Q9UBD3 114 aa8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 IGHV7-4-1A0A0J9YVY3 117 aa8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 ZNF491Q8N8L2 437 aa8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 A0A0U1RQV1 116 aa8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 MT-ATP8P03928 68 aa8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 FGF23Q9GZV9 251 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 SPRR3Q9UBC9 169 aa8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 KLK9Q9UKQ9 250 aa8.85□□□□□ -0.99
LIMCH1-217ENST00000512946 BRWD3Q6RI45 1802 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 MBD3L4A6NDZ8 208 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 MBD3L3A6NE82 208 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 MBD3L5A6NJ08 208 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 MBD3L2Q8NHZ7 208 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 DLEC1Q9Y238 1755 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 IGHV3-16A0A0C4DH30 117 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 A0A0J9YXV3 536 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 ATP6V0E1O15342 81 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 P0DMU3 169 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 FAM231AP0DMU4 169 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 FAM231CP0DMU5 169 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 COX7CP15954 63 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 RBX1P62877 108 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 WT1-ASQ06250 92 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 ODF1Q14990 250 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 HIST2H2BDQ6DRA6 164 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 AKAP6Q13023 2319 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 ATP1A1-AS1Q5TC04 95 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 UNQ6494/PRO21346Q6UXR6 183 aa8.84□□□□□ -0.99
LIMCH1-217ENST00000512946 USP17L23D6RBM5 183 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 ELANEP08246 267 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 CSRP2Q16527 193 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 AGPAT4-IT1Q9H0P7 198 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 DIDO1Q9BTC0 2240 aaKnown RBP8.83□□□□□ -1
LIMCH1-217ENST00000512946 A0A0J9YXY3 114 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 NSUN5P1Q3KNT7 163 aa8.83□□□□□ -1
LIMCH1-217ENST00000512946 TDRG1Q3Y452 100 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms