RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FCER1GP30273 86 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 COX8CQ7Z4L0 72 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 OR4X2Q8NGF9 303 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 FXYD2P54710 66 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 Q8N6K4 173 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 TMEM190Q8WZ59 177 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 SPCS1Q9Y6A9 102 aa7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 HRNRQ86YZ3 2850 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-215ENST00000512632 K7ERJ3 54 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 UFSP1Q6NVU6 142 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 HHLA3Q9XRX5 114 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 NXT2Q9NPJ8 142 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 TRAV40A0A0B4J280 105 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 K7ENP7 123 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 NCOR2Q9Y618 2525 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 MAP1AP78559 2803 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 TMEM8BA6NDV4 472 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 SMIM17P0DL12 118 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 ZNF502Q8TBZ5 544 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 KLK15Q9H2R5 256 aa7.13□□□□□ -1.27
LIMCH1-215ENST00000512632 K7EP34 96 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 GOSR1O95249 250 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 ZFAND3Q9H8U3 227 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 IGKCP01834 107 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 EFNA4P52798 201 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 TMEM78Q5T7P6 136 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 MRPL35Q9NZE8 188 aaKnown RBP7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 DEFB1P60022 68 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 SPANXN1Q5VSR9 72 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 HIVEP3Q5T1R4 2406 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 IGHV3OR16-10A0A075B7F0 116 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 A0A1W2PPM0 123 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 SIVA1O15304 175 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 LINC01559Q495D7 138 aa7.12□□□□□ -1.27
LIMCH1-215ENST00000512632 IGF1P05019 195 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 SMIM13P0DJ93 91 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 ADORA2A-AS1P86434 159 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 SMIM15Q7Z3B0 74 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 NHP2Q9NX24 153 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 TRBV25-1A0A075B6N4 114 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 CLPSL1A2RUU4 121 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 SAMD5Q5TGI4 173 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 TMEM219Q86XT9 240 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 CCDC140Q96MF4 163 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 CHAC1Q9BUX1 264 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 CNFNQ9BYD5 112 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 A0A1W2PPR1 153 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 H3BVH4 76 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 SAA4P35542 130 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 RPL24P83731 157 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 EBI3Q14213 229 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 FAM110DQ8TAY7 271 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 IGKV3-7A0A075B6H7 116 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 DPM2O94777 84 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 FABP2P12104 132 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 MINOS1Q5TGZ0 78 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 ARL6IP6Q8N6S5 226 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 MAPKAPK5-AS1Q8N8E1 139 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 MYOZ3Q8TDC0 251 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 PSMG3-AS1Q96PY0 264 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 MINOS1-NBL1R4GNA1 71 aa7.11□□□□□ -1.27
LIMCH1-215ENST00000512632 TRAV8-2A0A0B4J237 113 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 C8orf86Q6ZUL3 223 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 Q8N8P6 123 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 CREBBPQ92793 2442 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 FBXL19-AS1Q494R0 122 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 DEFB104AQ8WTQ1 72 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 CHD8Q9HCK8 2581 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 AGRNO00468 2067 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 C11orf71Q6IPW1 123 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 SLC50A1Q9BRV3 221 aa7.1□□□□□ -1.27
LIMCH1-215ENST00000512632 M0R381 172 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 C16orf92Q96LL3 132 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 METTL26Q96S19 204 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 CSTL1Q9H114 145 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 OOSP1A8MZH6 123 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 SIRPDQ9H106 197 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 IGLV2-18A0A075B6J9 118 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 ZMAT4Q9H898 229 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 IGHV7-4-1A0A0J9YVY3 117 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 ATP5LO75964 103 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 C1orf122Q6ZSJ8 110 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 HIF1ANQ9NWT6 349 aa7.09□□□□□ -1.27
LIMCH1-215ENST00000512632 LAGE3Q14657 143 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 PRR9Q5T870 116 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 NRACQ8N912 160 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 SPTBN4Q9H254 2564 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 RAB9AP51151 201 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 SRSF2Q01130 221 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 EEF1AKMT3Q96AZ1 226 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 CSPG4Q6UVK1 2322 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 COL12A1Q99715 3063 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 NPFFR1Q9GZQ6 430 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 RPL11P62913 178 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 GLMPQ8WWB7 406 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 UBTD1Q9HAC8 227 aa7.08□□□□□ -1.28
LIMCH1-215ENST00000512632 CELSR1Q9NYQ6 3014 aa7.07□□□□□ -1.28
LIMCH1-215ENST00000512632 S100A4P26447 101 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms