RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 YPEL4Q96NS1 127 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 CITED1Q99966 193 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 GNB1LQ9BYB4 327 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 ZMAT5Q9UDW3 170 aaKnown RBP6.35□□□□□ -1.39
SF3A1-210ENST00000498259 TMA7Q9Y2S6 64 aaKnown RBP6.35□□□□□ -1.39
SF3A1-210ENST00000498259 A0A0J9YX75 114 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 OR11H12B2RN74 326 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 SH2D1AO60880 128 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 HLA-DQA1P01909 254 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 CXCL1P09341 107 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 CDKN1BP46527 198 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 C9orf66Q5T8R8 295 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 C8orf49Q96NF6 230 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 CLUHP3Q96NS8 147 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 NEU1Q99519 415 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 TRAPPC1Q9Y5R8 145 aa6.34□□□□□ -1.39
SF3A1-210ENST00000498259 HIVEP1P15822 2718 aa6.34□□□□□ -1.4
SF3A1-210ENST00000498259 A0A1B0GUT8 65 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 ADARB2-AS1A8MUL3 147 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 IGLV1-51P01701 117 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 DEFB131AP59861 70 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 RAB4BP61018 213 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 HBBP68871 147 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 LINC01559Q495D7 138 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 SHISA2Q6UWI4 295 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 FAM159AQ6UWV7 190 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 ADAMTSL5Q6ZMM2 481 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 SMIM15Q7Z3B0 74 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 APRG1Q8IVJ8 170 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 C3orf56Q8N813 242 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 NUP35Q8NFH5 326 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 FRZBQ92765 325 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 MTORP42345 2549 aa6.33□□□□□ -1.4
SF3A1-210ENST00000498259 ZFHX3Q15911 3703 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 HLA-DRB4P13762 266 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 CD33P20138 364 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 EDN2P20800 178 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 S100A4P26447 101 aaKnown RBP6.32□□□□□ -1.4
SF3A1-210ENST00000498259 CRIP1P50238 77 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 TCL1AP56279 114 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 C12orf54Q6X4T0 127 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 LINC00322Q6ZN03 302 aaPredicted RBP6.32□□□□□ -1.4
SF3A1-210ENST00000498259 GTSCR1Q86UQ5 136 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 STHQ8IWL8 128 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 LINC00482Q8N8I6 264 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 FER1L6-AS1Q8NA97 138 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 FAM19A4Q96LR4 140 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 C20orf144Q9BQM9 153 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 ZNF747Q9BV97 191 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 HLA-DRB4X5D2U9 266 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 BAHCC1Q9P281 2608 aa6.32□□□□□ -1.4
SF3A1-210ENST00000498259 NSD1Q96L73 2696 aaPredicted RBP6.31□□□□□ -1.4
SF3A1-210ENST00000498259 C7orf71A4D174 169 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 SNURFLB1AK76 121 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 KLLNB2CW77 178 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 CA1P00915 261 aaPredicted RBP6.31□□□□□ -1.4
SF3A1-210ENST00000498259 TRGC2P03986 189 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 MED14OSP0DP75 135 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 RNASE4P34096 147 aaKnown RBP6.31□□□□□ -1.4
SF3A1-210ENST00000498259 CACNG7P62955 275 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 ACTL10Q5JWF8 245 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 PGLYRP4Q96LB8 373 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 TPPP3Q9BW30 176 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 MAP6D1Q9H9H5 199 aa6.31□□□□□ -1.4
SF3A1-210ENST00000498259 ZNF256Q9Y2P7 627 aaPredicted RBP6.31□□□□□ -1.4
SF3A1-210ENST00000498259 F6UB75 175 aa6.3□□□□□ -1.4
SF3A1-210ENST00000498259 H3BMM0 161 aa6.3□□□□□ -1.4
SF3A1-210ENST00000498259 APCSP02743 223 aa6.3□□□□□ -1.4
SF3A1-210ENST00000498259 ZNF705DP0CH99 300 aaPredicted RBP6.3□□□□□ -1.4
SF3A1-210ENST00000498259 ZNF705BP0CI00 300 aaPredicted RBP6.3□□□□□ -1.4
SF3A1-210ENST00000498259 ASIPP42127 132 aa6.3□□□□□ -1.4
SF3A1-210ENST00000498259 ZNF80P51504 273 aaPredicted RBP6.3□□□□□ -1.4
SF3A1-210ENST00000498259 FABP9Q0Z7S8 132 aa6.3□□□□□ -1.4
SF3A1-210ENST00000498259 MRPL54Q6P161 138 aaKnown RBP6.3□□□□□ -1.4
SF3A1-210ENST00000498259 ZFAND2AQ8N6M9 145 aa6.3□□□□□ -1.4
SF3A1-210ENST00000498259 C1QTNF4Q9BXJ3 329 aa6.3□□□□□ -1.4
SF3A1-210ENST00000498259 TRGV11A0A075B6L2 103 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 A8MTW9 85 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 SPINK4O60575 86 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 OR5AL1P0C617 328 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 CTRLP40313 264 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 CAMPP49913 170 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 KRTAP10-3P60369 221 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 TWIST1Q15672 202 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 BEAN1Q3B7T3 259 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 TDRG1Q3Y452 100 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 MORN3Q6PF18 240 aaPredicted RBP6.29□□□□□ -1.4
SF3A1-210ENST00000498259 LYZL1Q6UWQ5 148 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 TMEM256Q8N2U0 113 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 WFDC9Q8NEX5 89 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 GTSF1Q8WW33 167 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 MRPL18Q9H0U6 180 aaKnown RBP6.29□□□□□ -1.4
SF3A1-210ENST00000498259 NAGKQ9UJ70 344 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 NF1P21359 2839 aa6.29□□□□□ -1.4
SF3A1-210ENST00000498259 FN1P02751 2386 aaKnown RBP6.28□□□□□ -1.4
SF3A1-210ENST00000498259 TMSB15BA0A087X1C1 80 aa6.28□□□□□ -1.4
SF3A1-210ENST00000498259 J3KRW8 73 aa6.28□□□□□ -1.4
SF3A1-210ENST00000498259 INSP01308 110 aa6.28□□□□□ -1.4
SF3A1-210ENST00000498259 IGKV3-20P01619 116 aa6.28□□□□□ -1.4
SF3A1-210ENST00000498259 TRGC1P0CF51 173 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms