RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 PDPNQ86YL7 162 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 C20orf78Q9BR46 151 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 PLXND1Q9Y4D7 1925 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 IGLV3-12A0A075B6K2 115 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 IGHV3-64DA0A0J9YX35 117 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 PINLYPA6NC86 204 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 H3BUX3 64 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 FOXS1O43638 330 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 SRSF10O75494 262 aaKnown RBP4.1□□□□□ -1.75
USP54-216ENST00000498143 IGLV3-25P01717 112 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 UBE2BP63146 152 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 TDRG1Q3Y452 100 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 MKXQ8IYA7 352 aa4.1□□□□□ -1.75
USP54-216ENST00000498143 CHCHD1Q96BP2 118 aaKnown RBP4.1□□□□□ -1.75
USP54-216ENST00000498143 NSD1Q96L73 2696 aaPredicted RBP4.1□□□□□ -1.75
USP54-216ENST00000498143 IGHV1-24A0A0C4DH33 117 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 TNFRSF13BO14836 293 aaPredicted RBP4.09□□□□□ -1.75
USP54-216ENST00000498143 COX7CP15954 63 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 FKBP2P26885 142 aaKnown RBP4.09□□□□□ -1.75
USP54-216ENST00000498143 UBE2AP49459 152 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 EDDM3BP56851 147 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 HBBP68871 147 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 HOXA4Q00056 320 aaPredicted RBP4.09□□□□□ -1.75
USP54-216ENST00000498143 TRPT1Q86TN4 253 aaKnown RBP4.09□□□□□ -1.75
USP54-216ENST00000498143 C9orf85Q96MD7 179 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 TMEM222Q9H0R3 208 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 HEATR1Q9H583 2144 aaKnown RBP4.09□□□□□ -1.75
USP54-216ENST00000498143 PDFQ9HBH1 243 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 SMKR1H3BMG3 65 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 TCRAP04437 139 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 FUSP35637 526 aaKnown RBP eCLIP4.09□□□□□ -1.75
USP54-216ENST00000498143 LINC01620Q4KN68 170 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 CLEC19AQ6UXS0 136 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 TAF15Q92804 592 aaKnown RBP eCLIP4.09□□□□□ -1.75
USP54-216ENST00000498143 VSIG2Q96IQ7 327 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 C21orf62Q9NYP8 219 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 TRBV5-7A0A0A0MS05 114 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 SYS1-DBNDD2H3BUS1 97 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 J3QQQ9 107 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 CD7P09564 240 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 COX8AP10176 69 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 APOC4P55056 127 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 CACNG7P62955 275 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 TFF3Q07654 80 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 ASPHD1Q5U4P2 390 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 Q8TCH9 128 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 LINC00526Q96FQ7 95 aa4.09□□□□□ -1.75
USP54-216ENST00000498143 DYSFO75923 2080 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 SLC25A20O43772 301 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 GCHFRP30047 84 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 HGFACQ04756 655 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 FOXE3Q13461 319 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 Q6ZWC4 215 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 NDUFA11Q86Y39 141 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 IGFBPL1Q8WX77 278 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 AGMATQ9BSE5 352 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 TMEM167BQ9NRX6 74 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 KCNE3Q9Y6H6 103 aa4.09□□□□□ -1.76
USP54-216ENST00000498143 PDCD11Q14690 1871 aaKnown RBP4.08□□□□□ -1.76
USP54-216ENST00000498143 TRAV1-1A0A0B4J248 108 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 NUPR2A6NF83 97 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 TMEM178BH3BS89 294 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 PRB4P10163 310 aaPredicted RBP4.08□□□□□ -1.76
USP54-216ENST00000498143 RPL18AQ02543 176 aaKnown RBP4.08□□□□□ -1.76
USP54-216ENST00000498143 AJUBAQ96IF1 538 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 LINC00479Q96M42 142 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 LINC00527Q9UJ94 153 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 RFNGQ9Y644 331 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 HELZP42694 1942 aaKnown RBP4.08□□□□□ -1.76
USP54-216ENST00000498143 H3BT86 120 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 NCR2O95944 276 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 YPEL3P61236 119 aaPredicted RBP4.08□□□□□ -1.76
USP54-216ENST00000498143 RPL18Q07020 188 aaKnown RBP4.08□□□□□ -1.76
USP54-216ENST00000498143 EBLN2Q6P2I7 272 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 SPSB3Q6PJ21 355 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 LCNL1Q6ZST4 164 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 CEP192Q8TEP8 1941 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 FBN2P35556 2912 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 J3QT63 122 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 NDUFC1O43677 76 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 CRYBA2P53672 197 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 C1orf100Q5SVJ3 147 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 SEM1Q6ZVN7 128 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 HEATR5BQ9P2D3 2071 aa4.08□□□□□ -1.76
USP54-216ENST00000498143 TRBV5-4A0A0C4DH59 114 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 PLAC8L1A1L4L8 177 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 C16orf90A8MZG2 172 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 SRRM5B3KS81 715 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 IGHMP01871 453 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 BEAN1Q3B7T3 259 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 GNB4Q9HAV0 340 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 hADV29S1A0JD25 119 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 H0YJW9 148 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 HTN3P15516 51 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 SNRPD3P62318 126 aaKnown RBP4.07□□□□□ -1.76
USP54-216ENST00000498143 DAZ2Q13117 558 aaKnown RBP4.07□□□□□ -1.76
USP54-216ENST00000498143 NMSQ5H8A3 153 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 DAZ4Q86SG3 579 aaKnown RBP4.07□□□□□ -1.76
USP54-216ENST00000498143 LINC00643Q86TS7 51 aa4.07□□□□□ -1.76
USP54-216ENST00000498143 CHCHD5Q9BSY4 110 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms