RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	EIF3G	O75821	320 aa	Known RBP eCLIP	5	□□□□□ -1.61
VPS52-221	ENST00000495755	PTTG1	O95997	202 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	CSN1S1	P47710	185 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	TAS2R45	P59539	299 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	ESRG	Q1W209	222 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	ACOT6	Q3I5F7	207 aa	Predicted RBP	5	□□□□□ -1.61
VPS52-221	ENST00000495755	KHDC3L	Q587J8	217 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	SSX7	Q7RTT5	188 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	ARL6IP6	Q8N6S5	226 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	VSIG2	Q96IQ7	327 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	OTOR	Q9NRC9	128 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	LENEP	Q9Y5L5	61 aa		5	□□□□□ -1.61
VPS52-221	ENST00000495755	TRGV2	A0A075B6R0	118 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755		A0A096LPF7	62 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	TRGV1	A0A0A0MS02	117 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755		A0A1W2PPV4	95 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	PGP	A6NDG6	321 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	RGS13	O14921	159 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	RAB2A	P61019	212 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755		Q6AWC8	147 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	C6orf223	Q8N319	242 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	OR2G3	Q8NGZ4	309 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	TMED6	Q8WW62	240 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	AQP10	Q96PS8	301 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	UPK3B	Q9BT76	320 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755		Q9H8V8	135 aa		4.99	□□□□□ -1.61
VPS52-221	ENST00000495755	MED14OS	P0DP75	135 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	TNP2	Q05952	138 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755		Q5BKY6	102 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	MUC21	Q5SSG8	566 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	PQLC2	Q6ZP29	291 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	OR10G4	Q8NGN3	311 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	OR10G9	Q8NGN4	311 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	OR10G7	Q8NGN6	311 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	SUN5	Q8TC36	379 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	ST6GAL2	Q96JF0	529 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	HYLS1	Q96M11	299 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	ARPC5L	Q9BPX5	153 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	KRTAP17-1	Q9BYP8	105 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	KRTAP1-5	Q9BYS1	174 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	MED28	Q9H204	178 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	MRPL16	Q9NX20	251 aa	Known RBP	4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	MDFIC	Q9P1T7	246 aa		4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	MRPS16	Q9Y3D3	137 aa	Known RBP	4.98	□□□□□ -1.61
VPS52-221	ENST00000495755	HMGB3	O15347	200 aa	Known RBP	4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	GIP	P09681	153 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	STAG3L2	P0CL84	134 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	STAG3L3	P0CL85	134 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	ATP6V0C	P27449	155 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	ZNF415	Q09FC8	603 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	SLA	Q13239	276 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	FHL2	Q14192	279 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	TDRG1	Q3Y452	100 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	FAM74A1	Q5RGS3	127 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	GOLT1A	Q6ZVE7	132 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	HSD17B11	Q8NBQ5	300 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	CMTM2	Q8TAZ6	248 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	ASB13	Q8WXK3	278 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	RASL10A	Q92737	203 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	TVP23C	Q96ET8	276 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	PSMG3	Q9BT73	122 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	PRO0255	Q9UI72	69 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	MUC4	Q99102	2169 aa		4.97	□□□□□ -1.61
VPS52-221	ENST00000495755	TRAV8-1	A0A0A6YYK1	113 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755		A0A1W2PPQ1	181 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	PAX4	O43316	350 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	IGHV3-53	P01767	116 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	MB	P02144	154 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	ARL14EPL	P0DKL9	152 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	BTF3	P20290	206 aa	Known RBP	4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	CDC34	P49427	236 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	CRYBA4	P53673	196 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	GNG5	P63218	68 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	SERF2	P84101	59 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	TMEM183B	Q1AE95	376 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	TTC32	Q5I0X7	151 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	FAM159A	Q6UWV7	190 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	ZNF575	Q86XF7	245 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	IQCF2	Q8IXL9	164 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	TMEM183A	Q8IXX5	376 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	RAB24	Q969Q5	203 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	C8orf49	Q96NF6	230 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	SPX	Q9BT56	116 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	HHLA3	Q9XRX5	114 aa		4.96	□□□□□ -1.62
VPS52-221	ENST00000495755	TRGV11	A0A075B6L2	103 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	TRAV21	A0A0B4J279	112 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	IGHV3-16	A0A0C4DH30	117 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	SERTM2	A0A1B0GWG4	89 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	RNF222	A6NCQ9	220 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	GNRH2	O43555	120 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	TCRA	P04437	139 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	GCHFR	P30047	84 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	LYPD5	Q6UWN5	251 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	SH3BGRL3	Q9H299	93 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	TREM1	Q9NP99	234 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	RPH3AL	Q9UNE2	315 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	TNFSF18	Q9UNG2	199 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	ICOS	Q9Y6W8	199 aa		4.95	□□□□□ -1.62
VPS52-221	ENST00000495755	TRGV4	A0A0C4DH28	118 aa		4.94	□□□□□ -1.62
VPS52-221	ENST00000495755		F6UZH7	168 aa		4.94	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms