RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 RPS10P5Q9NQ39 176 aa9.37□□□□□ -0.91
VPS52-220ENST00000493674 KLLNB2CW77 178 aa9.36□□□□□ -0.91
VPS52-220ENST00000493674 H3BMM0 161 aa9.36□□□□□ -0.91
VPS52-220ENST00000493674 PPP1R2P9O14990 202 aa9.36□□□□□ -0.91
VPS52-220ENST00000493674 ZNF80P51504 273 aaPredicted RBP9.36□□□□□ -0.91
VPS52-220ENST00000493674 IBA57Q5T440 356 aaKnown RBP9.36□□□□□ -0.91
VPS52-220ENST00000493674 PRR9Q5T870 116 aa9.36□□□□□ -0.91
VPS52-220ENST00000493674 EBLN2Q6P2I7 272 aa9.36□□□□□ -0.91
VPS52-220ENST00000493674 RNASE7Q9H1E1 156 aaKnown RBP9.36□□□□□ -0.91
VPS52-220ENST00000493674 V9GYV3 84 aa9.36□□□□□ -0.91
VPS52-220ENST00000493674 RBMY1BA6NDE4 496 aaKnown RBP9.35□□□□□ -0.91
VPS52-220ENST00000493674 RBMY1EA6NEQ0 496 aaKnown RBP9.35□□□□□ -0.91
VPS52-220ENST00000493674 KNCNA6PVL3 124 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 OR11H12B2RN74 326 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 RBMY1DP0C7P1 496 aaKnown RBP9.35□□□□□ -0.91
VPS52-220ENST00000493674 IGLL1P15814 213 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 ZNF124Q15973 351 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 NUDT10Q8NFP7 164 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 OR10G8Q8NGN5 311 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 NUDT11Q96G61 164 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 YPEL4Q96NS1 127 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 TUBA4BQ9H853 241 aa9.35□□□□□ -0.91
VPS52-220ENST00000493674 CXorf65A6NEN9 183 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 H7BYZ3 331 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 SH2D1AO60880 128 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 CD7P09564 240 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 ERVFC1-1P60608 527 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 CT83Q5H943 113 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 FAM162BQ5T6X4 162 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 Q6AWC8 147 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 PRR27Q6MZM9 219 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 C15orf54Q8N8G6 183 aa9.34□□□□□ -0.91
VPS52-220ENST00000493674 PFN1P07737 140 aaKnown RBP9.33□□□□□ -0.92
VPS52-220ENST00000493674 LEPP41159 167 aa9.33□□□□□ -0.92
VPS52-220ENST00000493674 ACTL10Q5JWF8 245 aa9.33□□□□□ -0.92
VPS52-220ENST00000493674 TRPT1Q86TN4 253 aaKnown RBP9.33□□□□□ -0.92
VPS52-220ENST00000493674 CBLN2Q8IUK8 224 aa9.33□□□□□ -0.92
VPS52-220ENST00000493674 OR4B1Q8NGF8 309 aa9.33□□□□□ -0.92
VPS52-220ENST00000493674 IMMP2LQ96T52 175 aa9.33□□□□□ -0.92
VPS52-220ENST00000493674 RPP21Q9H633 154 aaKnown RBP9.33□□□□□ -0.92
VPS52-220ENST00000493674 SMCO4Q9NRQ5 59 aa9.33□□□□□ -0.92
VPS52-220ENST00000493674 NOTCH1P46531 2555 aa9.32□□□□□ -0.92
VPS52-220ENST00000493674 MUC4Q99102 2169 aa9.32□□□□□ -0.92
VPS52-220ENST00000493674 GATCO43716 136 aaKnown RBP9.32□□□□□ -0.92
VPS52-220ENST00000493674 EGFEM1PQ0D2K5 195 aa9.32□□□□□ -0.92
VPS52-220ENST00000493674 KIR3DS1Q14943 382 aa9.32□□□□□ -0.92
VPS52-220ENST00000493674 TMEM88Q6PEY1 159 aa9.32□□□□□ -0.92
VPS52-220ENST00000493674 ZNF575Q86XF7 245 aa9.32□□□□□ -0.92
VPS52-220ENST00000493674 C11orf21Q9P2W6 132 aa9.32□□□□□ -0.92
VPS52-220ENST00000493674 SMIM27A0A1W2PRY6 76 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 FABP5P3A8MUU1 101 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 P01737 135 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 TSPOP30536 169 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 CDKN1BP46527 198 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 BTN1A1Q13410 526 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 LINC01559Q495D7 138 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 WFDC10AQ9H1F0 79 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 IL36BQ9NZH7 164 aa9.31□□□□□ -0.92
VPS52-220ENST00000493674 C7orf71A4D174 169 aa9.3□□□□□ -0.92
VPS52-220ENST00000493674 ZNF705GA8MUZ8 300 aaPredicted RBP9.3□□□□□ -0.92
VPS52-220ENST00000493674 CRXO43186 299 aaPredicted RBP9.3□□□□□ -0.92
VPS52-220ENST00000493674 GPX1P07203 203 aa9.3□□□□□ -0.92
VPS52-220ENST00000493674 ELOBQ15370 118 aa9.3□□□□□ -0.92
VPS52-220ENST00000493674 GFI1BQ5VTD9 330 aa9.3□□□□□ -0.92
VPS52-220ENST00000493674 Q6ZQT7 251 aa9.3□□□□□ -0.92
VPS52-220ENST00000493674 Q8N1Y9 231 aa9.3□□□□□ -0.92
VPS52-220ENST00000493674 DAZAP1Q96EP5 407 aaKnown RBP9.3□□□□□ -0.92
VPS52-220ENST00000493674 PYGO2Q9BRQ0 406 aa9.3□□□□□ -0.92
VPS52-220ENST00000493674 TRAV9-1A0A075B6T8 112 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 TRAV21A0A0B4J279 112 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 FAM231BA6NCW3 169 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 M0R2Z0 102 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 ZNF324O75467 553 aaPredicted RBP9.29□□□□□ -0.92
VPS52-220ENST00000493674 CA1P00915 261 aaPredicted RBP9.29□□□□□ -0.92
VPS52-220ENST00000493674 IGKV3-20P01619 116 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 CXCL1P09341 107 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 SPINK13Q1W4C9 94 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 GTSCR1Q86UQ5 136 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 STHQ8IWL8 128 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 TSKUQ8WUA8 353 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 GFRA4Q9GZZ7 299 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 MEGF8Q7Z7M0 2845 aa9.29□□□□□ -0.92
VPS52-220ENST00000493674 TRBV24-1A0A075B6N3 115 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 IGKV3D-20A0A0C4DH25 116 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 COLCA2A8K830 154 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 A8MWL6 223 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 AMBPP02760 352 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 RNASE4P34096 147 aaKnown RBP9.28□□□□□ -0.92
VPS52-220ENST00000493674 FOXA3P55318 350 aaPredicted RBP9.28□□□□□ -0.92
VPS52-220ENST00000493674 RPL19P84098 196 aaKnown RBP9.28□□□□□ -0.92
VPS52-220ENST00000493674 OXLD1Q5BKU9 147 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 OR2D3Q8NGH3 330 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 GTSF1Q8WW33 167 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 NACAE9PAV3 2078 aa9.28□□□□□ -0.92
VPS52-220ENST00000493674 TMEM189A5PLL7 270 aa9.27□□□□□ -0.93
VPS52-220ENST00000493674 GIG44P09565 113 aaPredicted RBP9.27□□□□□ -0.93
VPS52-220ENST00000493674 IGLC6P0CF74 106 aa9.27□□□□□ -0.93
VPS52-220ENST00000493674 RBMY1A1P0DJD3 496 aaKnown RBP9.27□□□□□ -0.93
VPS52-220ENST00000493674 RBMY1CP0DJD4 496 aa9.27□□□□□ -0.93
VPS52-220ENST00000493674 KRTAP10-11P60412 298 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms